Analysis of interatomic Contacts of Structural Units in PDB entry:
7VVV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7VVV entry

There are 3 chains in PDB entry 7VVV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 17ALA 296
B
 PRO 11ALA 296
C
 ALA 13ALA 296
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 35 helices in PDB entry 7VVV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
22 36Right-handed alpha
Helix 2
AA2
A
50 59Right-handed alpha
Helix 3
AA3
A
73 86Right-handed alpha
Helix 4
AA4
A
89 91Right-handed 310
Helix 5
AA5
A
105 115Right-handed alpha
Helix 6
AA6
A
130 146Right-handed alpha
Helix 7
AA7
A
151 156Right-handed 310
Helix 8
AA8
A
162 166Right-handed 310
Helix 9
AA9
A
168 174Right-handed 310
Helix 10
AB1
A
175 189Right-handed alpha
Helix 11
AB2
A
203 213Right-handed alpha
Helix 12
AB3
A
234 243Right-handed alpha
Helix 13
AB4
A
268 279Right-handed alpha
Helix 14
AB5
B
22 36Right-handed alpha
Helix 15
AB6
B
50 59Right-handed alpha
Helix 16
AB7
B
72 86Right-handed alpha
Helix 17
AB8
B
89 93Right-handed 310
Helix 18
AB9
B
105 114Right-handed alpha
Helix 19
AC1
B
168 174Right-handed 310
Helix 20
AC2
B
175 189Right-handed alpha
Helix 21
AC3
B
203 213Right-handed alpha
Helix 22
AC4
B
234 242Right-handed alpha
Helix 23
AC5
B
268 279Right-handed alpha
Helix 24
AC6
C
14 18Right-handed 310
Helix 25
AC7
C
22 36Right-handed alpha
Helix 26
AC8
C
50 59Right-handed alpha
Helix 27
AC9
C
73 86Right-handed alpha
Helix 28
AD1
C
89 91Right-handed 310
Helix 29
AD2
C
105 114Right-handed alpha
Helix 30
AD3
C
130 143Right-handed alpha
Helix 31
AD4
C
168 174Right-handed 310
Helix 32
AD5
C
175 189Right-handed alpha
Helix 33
AD6
C
203 213Right-handed alpha
Helix 34
AD7
C
234 242Right-handed alpha
Helix 35
AD8
C
268 278Right-handed alpha
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There are 6 sheets in PDB entry 7VVV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
93 95first strand
Strand 2
A
64 68parallel
Strand 3
A
41 45parallel
Strand 4
A
117 120parallel
Strand 5
A
193 199parallel
Strand 6
A
285 295anti-parallel
Strand 7
A
216 227anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
93 95first strand
Strand 2
A
64 68parallel
Strand 3
A
41 45parallel
Strand 4
A
117 120parallel
Strand 5
A
193 199parallel
Strand 6
A
285 295anti-parallel
Strand 7
A
257 258anti-parallel
Strand 8
A
266 267anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
64 68first strand
Strand 2
B
41 45parallel
Strand 3
B
117 120parallel
Strand 4
B
193 199parallel
Strand 5
B
285 295anti-parallel
Strand 6
B
216 227anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
257 258first strand
Strand 2
B
266 267anti-parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
93 95first strand
Strand 2
C
64 68parallel
Strand 3
C
41 45parallel
Strand 4
C
117 120parallel
Strand 5
C
193 199parallel
Strand 6
C
285 294anti-parallel
Strand 7
C
217 227anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
257 258first strand
Strand 2
C
266 267anti-parallel
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