Analysis of interatomic Contacts of Structural Units in PDB entry:
7VVW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7VVW entry

There are 3 chains in PDB entry 7VVW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 13ALA 296
B
 PRO 11LEU 297
C
 PHE 16ALA 296
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 36 helices in PDB entry 7VVW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
14 18Right-handed 310
Helix 2
AA2
A
22 36Right-handed alpha
Helix 3
AA3
A
50 59Right-handed alpha
Helix 4
AA4
A
73 86Right-handed alpha
Helix 5
AA5
A
89 93Right-handed 310
Helix 6
AA6
A
105 114Right-handed alpha
Helix 7
AA7
A
130 141Right-handed alpha
Helix 8
AA8
A
168 174Right-handed 310
Helix 9
AA9
A
175 189Right-handed alpha
Helix 10
AB1
A
203 213Right-handed alpha
Helix 11
AB2
A
234 244Right-handed alpha
Helix 12
AB3
A
268 279Right-handed alpha
Helix 13
AB4
B
14 18Right-handed 310
Helix 14
AB5
B
22 36Right-handed alpha
Helix 15
AB6
B
50 59Right-handed alpha
Helix 16
AB7
B
73 86Right-handed alpha
Helix 17
AB8
B
89 91Right-handed 310
Helix 18
AB9
B
105 114Right-handed alpha
Helix 19
AC1
B
162 166Right-handed 310
Helix 20
AC2
B
168 174Right-handed 310
Helix 21
AC3
B
175 189Right-handed alpha
Helix 22
AC4
B
203 213Right-handed alpha
Helix 23
AC5
B
234 242Right-handed alpha
Helix 24
AC6
B
268 279Right-handed alpha
Helix 25
AC7
C
22 36Right-handed alpha
Helix 26
AC8
C
50 59Right-handed alpha
Helix 27
AC9
C
73 86Right-handed alpha
Helix 28
AD1
C
87 91Right-handed 310
Helix 29
AD2
C
105 114Right-handed alpha
Helix 30
AD3
C
130 146Right-handed alpha
Helix 31
AD4
C
162 166Right-handed 310
Helix 32
AD5
C
168 174Right-handed 310
Helix 33
AD6
C
175 189Right-handed alpha
Helix 34
AD7
C
203 213Right-handed alpha
Helix 35
AD8
C
234 243Right-handed alpha
Helix 36
AD9
C
268 279Right-handed alpha
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There are 6 sheets in PDB entry 7VVW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
64 68first strand
Strand 2
A
41 45parallel
Strand 3
A
117 120parallel
Strand 4
A
193 199parallel
Strand 5
A
285 294anti-parallel
Strand 6
A
217 227anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
257 258first strand
Strand 2
A
266 267anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
93 99first strand
Strand 2
B
64 69parallel
Strand 3
B
41 45parallel
Strand 4
B
117 120parallel
Strand 5
B
193 199parallel
Strand 6
B
284 295anti-parallel
Strand 7
B
216 228anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
257 258first strand
Strand 2
B
266 267anti-parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
93 95first strand
Strand 2
C
64 68parallel
Strand 3
C
41 45parallel
Strand 4
C
117 120parallel
Strand 5
C
193 199parallel
Strand 6
C
285 295anti-parallel
Strand 7
C
216 227anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
257 258first strand
Strand 2
C
266 267anti-parallel
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