Analysis of interatomic Contacts of Structural Units in PDB entry:
7VVX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7VVX entry

There are 3 chains in PDB entry 7VVX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 14ALA 296
B
 ALA 17LEU 297
C
 HIS 12LEU 297
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 7VVX. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
22 36Right-handed alpha
Helix 2
AA2
A
50 59Right-handed alpha
Helix 3
AA3
A
73 86Right-handed alpha
Helix 4
AA4
A
87 91Right-handed 310
Helix 5
AA5
A
105 115Right-handed alpha
Helix 6
AA6
A
168 174Right-handed 310
Helix 7
AA7
A
175 189Right-handed alpha
Helix 8
AA8
A
203 213Right-handed alpha
Helix 9
AA9
A
234 241Right-handed alpha
Helix 10
AB1
A
268 279Right-handed alpha
Helix 11
AB2
B
22 36Right-handed alpha
Helix 12
AB3
B
50 59Right-handed alpha
Helix 13
AB4
B
73 86Right-handed alpha
Helix 14
AB5
B
105 114Right-handed alpha
Helix 15
AB6
B
130 143Right-handed alpha
Helix 16
AB7
B
162 166Right-handed 310
Helix 17
AB8
B
168 174Right-handed 310
Helix 18
AB9
B
175 189Right-handed alpha
Helix 19
AC1
B
203 213Right-handed alpha
Helix 20
AC2
B
234 241Right-handed alpha
Helix 21
AC3
B
268 280Right-handed alpha
Helix 22
AC4
C
22 36Right-handed alpha
Helix 23
AC5
C
50 59Right-handed alpha
Helix 24
AC6
C
73 86Right-handed alpha
Helix 25
AC7
C
89 91Right-handed 310
Helix 26
AC8
C
105 113Right-handed alpha
Helix 27
AC9
C
130 141Right-handed alpha
Helix 28
AD1
C
168 174Right-handed 310
Helix 29
AD2
C
175 189Right-handed alpha
Helix 30
AD3
C
203 213Right-handed alpha
Helix 31
AD4
C
234 242Right-handed alpha
Helix 32
AD5
C
268 279Right-handed alpha
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There are 6 sheets in PDB entry 7VVX. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
93 99first strand
Strand 2
A
64 69parallel
Strand 3
A
41 45parallel
Strand 4
A
117 120parallel
Strand 5
A
193 199parallel
Strand 6
A
285 295anti-parallel
Strand 7
A
216 227anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
257 258first strand
Strand 2
A
266 267anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
64 68first strand
Strand 2
B
41 45parallel
Strand 3
B
117 121parallel
Strand 4
B
193 199parallel
Strand 5
B
285 294anti-parallel
Strand 6
B
217 227anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
64 68first strand
Strand 2
B
41 45parallel
Strand 3
B
117 121parallel
Strand 4
B
193 199parallel
Strand 5
B
285 294anti-parallel
Strand 6
B
257 258anti-parallel
Strand 7
B
266 267anti-parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
93 99first strand
Strand 2
C
64 69parallel
Strand 3
C
41 45parallel
Strand 4
C
117 120parallel
Strand 5
C
193 199parallel
Strand 6
C
285 295anti-parallel
Strand 7
C
216 227anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
257 258first strand
Strand 2
C
266 267anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il