Analysis of interatomic Contacts of Structural Units in PDB entry:
7VW3


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7VW3 entry

There are 4 chains in PDB entry 7VW3 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 2GLY 1053
B
 G 2 U 105
C
 A 4 C 43
D
 T 29 T 56
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 48 helices in PDB entry 7VW3. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
40 74Right-handed alpha
Helix 2
AA2
A
87 95Right-handed alpha
Helix 3
AA3
A
101 115Right-handed alpha
Helix 4
AA4
A
133 146Right-handed alpha
Helix 5
AA5
A
149 160Right-handed alpha
Helix 6
AA6
A
166 170Right-handed 310
Helix 7
AA7
A
172 189Right-handed alpha
Helix 8
AA8
A
195 206Right-handed alpha
Helix 9
AA9
A
225 230Right-handed alpha
Helix 10
AB1
A
250 263Right-handed alpha
Helix 11
AB2
A
276 287Right-handed alpha
Helix 12
AB3
A
295 299Right-handed 310
Helix 13
AB4
A
326 334Right-handed alpha
Helix 14
AB5
A
338 343Right-handed alpha
Helix 15
AB6
A
344 358Right-handed alpha
Helix 16
AB7
A
362 370Right-handed alpha
Helix 17
AB8
A
376 384Right-handed alpha
Helix 18
AB9
A
396 410Right-handed alpha
Helix 19
AC1
A
414 421Right-handed alpha
Helix 20
AC2
A
438 445Right-handed 310
Helix 21
AC3
A
447 469Right-handed alpha
Helix 22
AC4
A
483 493Right-handed alpha
Helix 23
AC5
A
505 510Right-handed alpha
Helix 24
AC6
A
511 519Right-handed 310
Helix 25
AC7
A
521 530Right-handed alpha
Helix 26
AC8
A
542 549Right-handed alpha
Helix 27
AC9
A
560 564Right-handed 310
Helix 28
AD1
A
577 581Right-handed alpha
Helix 29
AD2
A
587 592Right-handed alpha
Helix 30
AD3
A
600 612Right-handed alpha
Helix 31
AD4
A
619 626Right-handed alpha
Helix 32
AD5
A
635 641Right-handed alpha
Helix 33
AD6
A
650 667Right-handed alpha
Helix 34
AD7
A
677 688Right-handed alpha
Helix 35
AD8
A
696 698Right-handed 310
Helix 36
AD9
A
699 715Right-handed alpha
Helix 37
AE1
A
721 730Right-handed alpha
Helix 38
AE2
A
737 741Right-handed 310
Helix 39
AE3
A
746 754Right-handed alpha
Helix 40
AE4
A
756 759Right-handed 310
Helix 41
AE5
A
760 765Right-handed alpha
Helix 42
AE6
A
816 821Right-handed alpha
Helix 43
AE7
A
823 826Right-handed 310
Helix 44
AE8
A
827 832Right-handed alpha
Helix 45
AE9
A
833 847Right-handed alpha
Helix 46
AF1
A
852 862Right-handed alpha
Helix 47
AF2
A
943 953Right-handed alpha
Helix 48
AF3
A
1000 1009Right-handed alpha
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There are 7 sheets in PDB entry 7VW3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
672 676first strand
Strand 2
A
473 477parallel
Strand 3
A
5 11parallel
Strand 4
A
15 22anti-parallel
Strand 5
A
28 35anti-parallel
Strand 6
A
770 773parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
246 247first strand
Strand 2
A
392 393anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
553 557first strand
Strand 2
A
572 576anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
879 886first strand
Strand 2
A
799 806anti-parallel
Strand 3
A
789 793anti-parallel
Strand 4
A
904 906anti-parallel
Strand 5
A
891 892anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
922 929first strand
Strand 2
A
911 919anti-parallel
Strand 3
A
961 966anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
933 936first strand
Strand 2
A
939 942anti-parallel
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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1016 1019first strand
Strand 2
A
991 995anti-parallel
Strand 3
A
977 986anti-parallel
Strand 4
A
971 974anti-parallel
Strand 5
A
1027 1032anti-parallel
Strand 6
A
1038 1040anti-parallel
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