Analysis of interatomic Contacts of Structural Units in PDB entry:
7VW5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7VW5 entry

There are 2 chains in PDB entry 7VW5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 104GLU 601
B
 PRO 104ILE 602
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 43 helices in PDB entry 7VW5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
116 131Right-handed alpha
Helix 2
AA2
A
138 152Right-handed alpha
Helix 3
AA3
A
192 206Right-handed alpha
Helix 4
AA4
A
213 232Right-handed alpha
Helix 5
AA5
A
236 243Right-handed alpha
Helix 6
AA6
A
248 261Right-handed alpha
Helix 7
AA7
A
261 272Right-handed alpha
Helix 8
AA8
A
281 285Right-handed 310
Helix 9
AA9
A
314 337Right-handed alpha
Helix 10
AB1
A
348 360Right-handed alpha
Helix 11
AB2
A
375 378Right-handed 310
Helix 12
AB3
A
379 394Right-handed alpha
Helix 13
AB4
A
396 411Right-handed alpha
Helix 14
AB5
A
424 451Right-handed alpha
Helix 15
AB6
A
451 456Right-handed alpha
Helix 16
AB7
A
475 487Right-handed alpha
Helix 17
AB8
A
488 490Right-handed 310
Helix 18
AB9
A
523 532Right-handed alpha
Helix 19
AC1
A
538 557Right-handed alpha
Helix 20
AC2
A
561 574Right-handed alpha
Helix 21
AC3
A
578 591Right-handed alpha
Helix 22
AC4
A
591 600Right-handed alpha
Helix 23
AC5
B
116 131Right-handed alpha
Helix 24
AC6
B
137 151Right-handed alpha
Helix 25
AC7
B
192 203Right-handed alpha
Helix 26
AC8
B
207 213Right-handed alpha
Helix 27
AC9
B
213 232Right-handed alpha
Helix 28
AD1
B
236 243Right-handed alpha
Helix 29
AD2
B
248 272Right-handed alpha
Helix 30
AD3
B
281 284Right-handed 310
Helix 31
AD4
B
314 337Right-handed alpha
Helix 32
AD5
B
348 360Right-handed alpha
Helix 33
AD6
B
375 378Right-handed 310
Helix 34
AD7
B
379 393Right-handed alpha
Helix 35
AD8
B
396 412Right-handed alpha
Helix 36
AD9
B
424 451Right-handed alpha
Helix 37
AE1
B
451 456Right-handed alpha
Helix 38
AE2
B
475 487Right-handed alpha
Helix 39
AE3
B
523 531Right-handed alpha
Helix 40
AE4
B
538 557Right-handed alpha
Helix 41
AE5
B
561 574Right-handed alpha
Helix 42
AE6
B
578 591Right-handed alpha
Helix 43
AE7
B
591 596Right-handed alpha
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There are 5 sheets in PDB entry 7VW5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
341 343first strand
Strand 2
A
460 463parallel
Strand 3
A
466 470anti-parallel
Strand 4
A
365 370anti-parallel
Strand 5
A
491 496anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
507 511first strand
Strand 2
A
518 522anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
286 287first strand
Strand 2
B
309 310anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
341 343first strand
Strand 2
B
460 463parallel
Strand 3
B
466 470anti-parallel
Strand 4
B
365 370anti-parallel
Strand 5
B
491 496anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
507 511first strand
Strand 2
B
518 522anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il