Analysis of interatomic Contacts of Structural Units in PDB entry:
7VW6

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7VW6 entry

There are 2 chains in PDB entry 7VW6 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 69	ALA 981
B	GLY 1027	GLU 1586

There are 77 helices in PDB entry 7VW6. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	86	94	Right-handed alpha
Helix 2	AA2	A	146	164	Right-handed alpha
Helix 3	AA3	A	166	170	Right-handed 310
Helix 4	AA4	A	175	184	Right-handed alpha
Helix 5	AA5	A	210	213	Right-handed 310
Helix 6	AA6	A	217	225	Right-handed alpha
Helix 7	AA7	A	237	241	Right-handed 310
Helix 8	AA8	A	250	254	Right-handed 310
Helix 9	AA9	A	260	266	Right-handed alpha
Helix 10	AB1	A	275	277	Right-handed 310
Helix 11	AB2	A	329	335	Right-handed alpha
Helix 12	AB3	A	336	341	Right-handed 310
Helix 13	AB4	A	367	370	Right-handed 310
Helix 14	AB5	A	376	396	Right-handed alpha
Helix 15	AB6	A	409	423	Right-handed alpha
Helix 16	AB7	A	432	437	Right-handed alpha
Helix 17	AB8	A	437	449	Right-handed alpha
Helix 18	AB9	A	456	463	Right-handed 310
Helix 19	AC1	A	472	477	Right-handed alpha
Helix 20	AC2	A	477	492	Right-handed alpha
Helix 21	AC3	A	503	509	Right-handed 310
Helix 22	AC4	A	519	534	Right-handed alpha
Helix 23	AC5	A	538	545	Right-handed alpha
Helix 24	AC6	A	548	556	Right-handed alpha
Helix 25	AC7	A	557	559	Right-handed 310
Helix 26	AC8	A	560	569	Right-handed alpha
Helix 27	AC9	A	571	585	Right-handed alpha
Helix 28	AD1	A	593	598	Right-handed alpha
Helix 29	AD2	A	601	617	Right-handed alpha
Helix 30	AD3	A	634	641	Right-handed alpha
Helix 31	AD4	A	656	668	Right-handed alpha
Helix 32	AD5	A	678	688	Right-handed alpha
Helix 33	AD6	A	700	705	Right-handed alpha
Helix 34	AD7	A	707	717	Right-handed alpha
Helix 35	AD8	A	730	735	Right-handed 310
Helix 36	AD9	A	743	747	Right-handed 310
Helix 37	AE1	A	773	785	Right-handed alpha
Helix 38	AE2	A	793	803	Right-handed alpha
Helix 39	AE3	A	804	809	Right-handed 310
Helix 40	AE4	A	812	820	Right-handed alpha
Helix 41	AE5	A	885	888	Right-handed 310
Helix 42	AE6	A	889	896	Right-handed alpha
Helix 43	AE7	A	904	912	Right-handed alpha
Helix 44	AE8	A	953	957	Right-handed 310
Helix 45	AE9	B	1034	1040	Right-handed 310
Helix 46	AF1	B	1052	1064	Right-handed alpha
Helix 47	AF2	B	1069	1071	Right-handed 310
Helix 48	AF3	B	1072	1085	Right-handed alpha
Helix 49	AF4	B	1089	1100	Right-handed alpha
Helix 50	AF5	B	1102	1111	Right-handed alpha
Helix 51	AF6	B	1136	1142	Right-handed alpha
Helix 52	AF7	B	1143	1155	Right-handed alpha
Helix 53	AF8	B	1170	1174	Right-handed 310
Helix 54	AF9	B	1188	1198	Right-handed alpha
Helix 55	AG1	B	1210	1217	Right-handed alpha
Helix 56	AG2	B	1220	1229	Right-handed alpha
Helix 57	AG3	B	1232	1244	Right-handed alpha
Helix 58	AG4	B	1254	1265	Right-handed alpha
Helix 59	AG5	B	1283	1290	Right-handed alpha
Helix 60	AG6	B	1292	1307	Right-handed alpha
Helix 61	AG7	B	1320	1332	Right-handed alpha
Helix 62	AG8	B	1349	1353	Right-handed 310
Helix 63	AG9	B	1354	1363	Right-handed alpha
Helix 64	AH1	B	1380	1384	Right-handed 310
Helix 65	AH2	B	1391	1396	Right-handed alpha
Helix 66	AH3	B	1396	1404	Right-handed alpha
Helix 67	AH4	B	1404	1410	Right-handed alpha
Helix 68	AH5	B	1441	1450	Right-handed alpha
Helix 69	AH6	B	1465	1469	Right-handed 310
Helix 70	AH7	B	1486	1490	Right-handed 310
Helix 71	AH8	B	1506	1522	Right-handed alpha
Helix 72	AH9	B	1526	1531	Right-handed alpha
Helix 73	AI1	B	1531	1541	Right-handed alpha
Helix 74	AI2	B	1546	1561	Right-handed alpha
Helix 75	AI3	B	1563	1569	Right-handed alpha
Helix 76	AI4	B	1570	1580	Right-handed alpha
Helix 77	AI5	B	1581	1584	Right-handed 310

There are 15 sheets in PDB entry 7VW6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	78	81	first strand
Strand 2	A	70	74	anti-parallel
Strand 3	A	141	143	parallel
Strand 4	A	119	122	anti-parallel
Strand 5	A	129	130	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	206	208	first strand
Strand 2	A	271	273	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	232	234	first strand
Strand 2	A	243	245	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	289	294	first strand
Strand 2	A	303	308	anti-parallel
Strand 3	A	313	318	anti-parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	372	374	first strand
Strand 2	A	349	351	anti-parallel
Strand 3	A	737	740	anti-parallel
Strand 4	A	720	725	parallel
Strand 5	A	693	697	parallel
Strand 6	A	400	403	parallel
Strand 7	A	429	430	parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	511	513	first strand
Strand 2	A	494	498	parallel
Strand 3	A	465	469	parallel
Strand 4	A	588	592	parallel
Strand 5	A	625	628	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	546	547	first strand
Strand 2	A	849	850	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	647	648	first strand
Strand 2	A	652	653	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	749	752	first strand
Strand 2	A	757	761	anti-parallel
Strand 3	A	821	823	anti-parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	869	874	first strand
Strand 2	A	942	946	parallel
Strand 3	A	900	903	anti-parallel
Strand 4	A	927	934	parallel
Strand 5	A	918	922	anti-parallel
Strand 6	A	974	980	anti-parallel
Strand 7	A	869	874	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	959	962	first strand
Strand 2	A	969	970	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1087	1088	first strand
Strand 2	B	1118	1119	parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1160	1165	first strand
Strand 2	B	1129	1134	parallel
Strand 3	B	1177	1179	anti-parallel
Strand 4	B	1182	1184	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1340	1345	first strand
Strand 2	B	1309	1316	parallel
Strand 3	B	1269	1275	parallel
Strand 4	B	1386	1390	parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1432	1437	first strand
Strand 2	B	1419	1426	anti-parallel
Strand 3	B	1497	1502	parallel
Strand 4	B	1459	1463	anti-parallel
Strand 5	B	1472	1473	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7VW6

Analysis of interatomic Contacts of Structural Units in PDB entry:
7VW6