Analysis of interatomic Contacts of Structural Units in PDB entry:
7VWP

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7VWP entry

There are 4 chains in PDB entry 7VWP (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
D	ILE 4	ARG 497
A	ASN 2	ARG 497
B	THR 3	ARG 497
C	ILE 4	ARG 497

There are 70 helices in PDB entry 7VWP. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	D	14	27	Right-handed alpha
Helix 2	AA2	D	50	59	Right-handed alpha
Helix 3	AA3	D	60	61	Right-handed 310
Helix 4	AA4	D	62	67	Right-handed 310
Helix 5	AA5	D	85	87	Right-handed 310
Helix 6	AA6	D	98	113	Right-handed alpha
Helix 7	AA7	D	159	165	Right-handed alpha
Helix 8	AA8	D	231	244	Right-handed alpha
Helix 9	AA9	D	277	279	Right-handed 310
Helix 10	AB1	D	290	310	Right-handed alpha
Helix 11	AB2	D	316	318	Right-handed 310
Helix 12	AB3	D	319	345	Right-handed alpha
Helix 13	AB4	D	346	348	Right-handed 310
Helix 14	AB5	D	349	360	Right-handed alpha
Helix 15	AB6	D	362	375	Right-handed alpha
Helix 16	AB7	D	412	416	Right-handed 310
Helix 17	AB8	D	429	435	Right-handed alpha
Helix 18	AB9	D	436	439	Right-handed 310
Helix 19	AC1	D	484	494	Right-handed alpha
Helix 20	AC2	A	14	27	Right-handed alpha
Helix 21	AC3	A	50	59	Right-handed alpha
Helix 22	AC4	A	85	87	Right-handed 310
Helix 23	AC5	A	98	113	Right-handed alpha
Helix 24	AC6	A	159	166	Right-handed alpha
Helix 25	AC7	A	231	244	Right-handed alpha
Helix 26	AC8	A	277	279	Right-handed 310
Helix 27	AC9	A	290	310	Right-handed alpha
Helix 28	AD1	A	319	345	Right-handed alpha
Helix 29	AD2	A	346	348	Right-handed 310
Helix 30	AD3	A	349	360	Right-handed alpha
Helix 31	AD4	A	362	375	Right-handed alpha
Helix 32	AD5	A	412	416	Right-handed 310
Helix 33	AD6	A	429	435	Right-handed alpha
Helix 34	AD7	A	436	439	Right-handed 310
Helix 35	AD8	A	484	494	Right-handed alpha
Helix 36	AD9	B	14	27	Right-handed alpha
Helix 37	AE1	B	50	59	Right-handed alpha
Helix 38	AE2	B	60	61	Right-handed 310
Helix 39	AE3	B	62	67	Right-handed 310
Helix 40	AE4	B	98	113	Right-handed alpha
Helix 41	AE5	B	159	166	Right-handed alpha
Helix 42	AE6	B	231	244	Right-handed alpha
Helix 43	AE7	B	277	279	Right-handed 310
Helix 44	AE8	B	291	310	Right-handed alpha
Helix 45	AE9	B	319	345	Right-handed alpha
Helix 46	AF1	B	346	348	Right-handed 310
Helix 47	AF2	B	349	360	Right-handed alpha
Helix 48	AF3	B	362	375	Right-handed alpha
Helix 49	AF4	B	412	416	Right-handed 310
Helix 50	AF5	B	429	435	Right-handed alpha
Helix 51	AF6	B	436	439	Right-handed 310
Helix 52	AF7	B	484	494	Right-handed alpha
Helix 53	AF8	C	14	27	Right-handed alpha
Helix 54	AF9	C	50	59	Right-handed alpha
Helix 55	AG1	C	60	61	Right-handed 310
Helix 56	AG2	C	62	66	Right-handed 310
Helix 57	AG3	C	85	87	Right-handed 310
Helix 58	AG4	C	98	113	Right-handed alpha
Helix 59	AG5	C	159	165	Right-handed alpha
Helix 60	AG6	C	231	244	Right-handed alpha
Helix 61	AG7	C	277	279	Right-handed 310
Helix 62	AG8	C	290	310	Right-handed alpha
Helix 63	AG9	C	319	345	Right-handed alpha
Helix 64	AH1	C	346	348	Right-handed 310
Helix 65	AH2	C	349	360	Right-handed alpha
Helix 66	AH3	C	362	375	Right-handed alpha
Helix 67	AH4	C	412	416	Right-handed 310
Helix 68	AH5	C	429	436	Right-handed alpha
Helix 69	AH6	C	437	439	Right-handed 310
Helix 70	AH7	C	484	494	Right-handed alpha

There are 29 sheets in PDB entry 7VWP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	116	118	first strand
Strand 2	D	31	34	parallel
Strand 3	D	8	11	parallel
Strand 4	D	150	153	parallel
Strand 5	D	273	275	parallel
Strand 6	D	269	270	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	71	72	first strand
Strand 2	D	93	94	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	74	77	first strand
Strand 2	D	80	83	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	122	128	first strand
Strand 2	D	133	138	anti-parallel
Strand 3	D	143	148	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	171	172	first strand
Strand 2	D	262	264	anti-parallel
Strand 3	D	281	282	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	191	197	first strand
Strand 2	D	200	208	anti-parallel
Strand 3	D	211	218	anti-parallel
Strand 4	D	177	184	anti-parallel
Strand 5	D	251	259	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	408	410	first strand
Strand 2	D	398	401	anti-parallel
Strand 3	D	442	448	anti-parallel
Strand 4	D	420	424	parallel
Strand 5	D	461	466	anti-parallel
Strand 6	D	472	477	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	116	118	first strand
Strand 2	A	31	34	parallel
Strand 3	A	8	11	parallel
Strand 4	A	150	153	parallel
Strand 5	A	273	275	parallel
Strand 6	A	269	270	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	74	77	first strand
Strand 2	A	80	83	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	122	128	first strand
Strand 2	A	133	139	anti-parallel
Strand 3	A	142	148	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	171	172	first strand
Strand 2	A	262	264	anti-parallel
Strand 3	A	281	282	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	191	197	first strand
Strand 2	A	200	206	anti-parallel
Strand 3	A	211	218	anti-parallel
Strand 4	A	177	184	anti-parallel
Strand 5	A	251	259	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	398	399	first strand
Strand 2	A	409	410	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	442	446	first strand
Strand 2	A	420	424	parallel
Strand 3	A	461	466	anti-parallel
Strand 4	A	472	477	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	116	119	first strand
Strand 2	B	31	35	parallel
Strand 3	B	8	11	parallel
Strand 4	B	150	153	parallel
Strand 5	B	273	275	parallel
Strand 6	B	269	270	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	71	72	first strand
Strand 2	B	93	94	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	74	77	first strand
Strand 2	B	80	83	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	122	128	first strand
Strand 2	B	133	138	anti-parallel
Strand 3	B	144	148	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	171	172	first strand
Strand 2	B	262	264	anti-parallel
Strand 3	B	281	282	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	191	197	first strand
Strand 2	B	200	206	anti-parallel
Strand 3	B	211	218	anti-parallel
Strand 4	B	177	184	anti-parallel
Strand 5	B	251	259	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	408	410	first strand
Strand 2	B	398	400	anti-parallel
Strand 3	B	448	450	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	442	446	first strand
Strand 2	B	420	424	parallel
Strand 3	B	461	466	anti-parallel
Strand 4	B	472	477	anti-parallel

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There are 6 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	116	118	first strand
Strand 2	C	31	34	parallel
Strand 3	C	8	11	parallel
Strand 4	C	150	153	parallel
Strand 5	C	273	275	parallel
Strand 6	C	269	270	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	70	71	first strand
Strand 2	C	94	95	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	74	77	first strand
Strand 2	C	80	83	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	126	128	first strand
Strand 2	C	133	135	anti-parallel
Strand 3	C	146	148	anti-parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	171	172	first strand
Strand 2	C	262	264	anti-parallel
Strand 3	C	281	282	anti-parallel

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There are 5 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	191	197	first strand
Strand 2	C	200	206	anti-parallel
Strand 3	C	211	218	anti-parallel
Strand 4	C	177	184	anti-parallel
Strand 5	C	251	259	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	442	446	first strand
Strand 2	C	420	424	parallel
Strand 3	C	463	466	anti-parallel
Strand 4	C	472	476	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7VWP

Analysis of interatomic Contacts of Structural Units in PDB entry:
7VWP