Analysis of interatomic Contacts of Structural Units in PDB entry:
7VXM

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7VXM entry

There are 4 chains in PDB entry 7VXM (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 14	SER 1161
C	SER 19	ASP 615
D	GLN 14	SER 1161
B	GLN 14	SER 1161

There are 94 helices in PDB entry 7VXM. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	294	304	Right-handed alpha
Helix 2	AA2	A	338	344	Right-handed alpha
Helix 3	AA3	A	365	371	Right-handed alpha
Helix 4	AA4	A	386	389	Right-handed 310
Helix 5	AA5	A	416	422	Right-handed alpha
Helix 6	AA6	A	737	743	Right-handed alpha
Helix 7	AA7	A	746	755	Right-handed alpha
Helix 8	AA8	A	758	780	Right-handed alpha
Helix 9	AA9	A	818	825	Right-handed alpha
Helix 10	AB1	A	849	854	Right-handed alpha
Helix 11	AB2	A	866	884	Right-handed alpha
Helix 12	AB3	A	897	909	Right-handed alpha
Helix 13	AB4	A	913	919	Right-handed alpha
Helix 14	AB5	A	919	941	Right-handed alpha
Helix 15	AB6	A	942	944	Right-handed 310
Helix 16	AB7	A	945	965	Right-handed alpha
Helix 17	AB8	A	976	982	Right-handed alpha
Helix 18	AB9	A	985	1032	Right-handed alpha
Helix 19	AC1	A	1140	1152	Right-handed alpha
Helix 20	AC2	A	1155	1161	Right-handed alpha
Helix 21	AC3	C	20	53	Right-handed alpha
Helix 22	AC4	C	55	81	Right-handed alpha
Helix 23	AC5	C	84	88	Right-handed 310
Helix 24	AC6	C	90	102	Right-handed alpha
Helix 25	AC7	C	103	108	Right-handed 310
Helix 26	AC8	C	109	130	Right-handed alpha
Helix 27	AC9	C	146	155	Right-handed alpha
Helix 28	AD1	C	157	172	Right-handed alpha
Helix 29	AD2	C	176	194	Right-handed alpha
Helix 30	AD3	C	199	205	Right-handed alpha
Helix 31	AD4	C	206	208	Right-handed 310
Helix 32	AD5	C	220	250	Right-handed alpha
Helix 33	AD6	C	275	279	Right-handed 310
Helix 34	AD7	C	293	301	Right-handed alpha
Helix 35	AD8	C	303	318	Right-handed alpha
Helix 36	AD9	C	324	330	Right-handed alpha
Helix 37	AE1	C	365	385	Right-handed alpha
Helix 38	AE2	C	386	388	Right-handed 310
Helix 39	AE3	C	389	393	Right-handed 310
Helix 40	AE4	C	399	413	Right-handed alpha
Helix 41	AE5	C	414	421	Right-handed alpha
Helix 42	AE6	C	431	447	Right-handed alpha
Helix 43	AE7	C	448	466	Right-handed alpha
Helix 44	AE8	C	469	471	Right-handed 310
Helix 45	AE9	C	472	485	Right-handed alpha
Helix 46	AF1	C	498	503	Right-handed alpha
Helix 47	AF2	C	503	508	Right-handed alpha
Helix 48	AF3	C	513	533	Right-handed alpha
Helix 49	AF4	C	538	542	Right-handed 310
Helix 50	AF5	C	548	559	Right-handed alpha
Helix 51	AF6	C	565	575	Right-handed alpha
Helix 52	AF7	C	581	588	Right-handed alpha
Helix 53	AF8	C	588	599	Right-handed alpha
Helix 54	AF9	D	294	304	Right-handed alpha
Helix 55	AG1	D	365	371	Right-handed alpha
Helix 56	AG2	D	383	387	Right-handed 310
Helix 57	AG3	D	405	410	Right-handed 310
Helix 58	AG4	D	416	422	Right-handed alpha
Helix 59	AG5	D	737	743	Right-handed alpha
Helix 60	AG6	D	746	754	Right-handed alpha
Helix 61	AG7	D	755	757	Right-handed 310
Helix 62	AG8	D	758	782	Right-handed alpha
Helix 63	AG9	D	816	825	Right-handed alpha
Helix 64	AH1	D	849	855	Right-handed alpha
Helix 65	AH2	D	866	884	Right-handed alpha
Helix 66	AH3	D	886	891	Right-handed alpha
Helix 67	AH4	D	897	909	Right-handed alpha
Helix 68	AH5	D	913	941	Right-handed alpha
Helix 69	AH6	D	945	965	Right-handed alpha
Helix 70	AH7	D	966	968	Right-handed 310
Helix 71	AH8	D	976	982	Right-handed alpha
Helix 72	AH9	D	985	1032	Right-handed alpha
Helix 73	AI1	D	1140	1161	Right-handed alpha
Helix 74	AI2	B	294	304	Right-handed alpha
Helix 75	AI3	B	338	343	Right-handed alpha
Helix 76	AI4	B	365	371	Right-handed alpha
Helix 77	AI5	B	404	410	Right-handed 310
Helix 78	AI6	B	416	422	Right-handed alpha
Helix 79	AI7	B	737	743	Right-handed alpha
Helix 80	AI8	B	747	754	Right-handed alpha
Helix 81	AI9	B	755	757	Right-handed 310
Helix 82	AJ1	B	758	780	Right-handed alpha
Helix 83	AJ2	B	817	825	Right-handed alpha
Helix 84	AJ3	B	849	854	Right-handed alpha
Helix 85	AJ4	B	866	885	Right-handed alpha
Helix 86	AJ5	B	886	891	Right-handed alpha
Helix 87	AJ6	B	897	909	Right-handed alpha
Helix 88	AJ7	B	913	941	Right-handed alpha
Helix 89	AJ8	B	945	965	Right-handed alpha
Helix 90	AJ9	B	966	968	Right-handed 310
Helix 91	AK1	B	976	984	Right-handed alpha
Helix 92	AK2	B	985	1032	Right-handed alpha
Helix 93	AK3	B	1125	1129	Right-handed 310
Helix 94	AK4	B	1140	1160	Right-handed alpha

There are 47 sheets in PDB entry 7VXM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	27	30	first strand
Strand 2	A	61	64	anti-parallel
Strand 3	A	264	267	anti-parallel
Strand 4	A	90	96	anti-parallel
Strand 5	A	188	197	anti-parallel
Strand 6	A	200	205	anti-parallel
Strand 7	A	224	230	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	48	55	first strand
Strand 2	A	271	279	anti-parallel
Strand 3	A	285	289	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	83	85	first strand
Strand 2	A	237	239	anti-parallel
Strand 3	A	105	107	anti-parallel
Strand 4	A	116	121	anti-parallel
Strand 5	A	126	131	anti-parallel
Strand 6	A	168	171	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	141	142	first strand
Strand 2	A	156	157	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	311	318	first strand
Strand 2	A	593	599	anti-parallel
Strand 3	A	609	612	anti-parallel
Strand 4	A	649	651	anti-parallel
Strand 5	A	642	644	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	325	327	first strand
Strand 2	A	538	542	parallel
Strand 3	A	548	554	anti-parallel
Strand 4	A	584	588	anti-parallel
Strand 5	A	573	577	anti-parallel
Strand 6	A	565	567	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	355	358	first strand
Strand 2	A	394	402	anti-parallel
Strand 3	A	508	516	anti-parallel
Strand 4	A	432	437	anti-parallel
Strand 5	A	376	379	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	391	392	first strand
Strand 2	A	524	525	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	452	454	first strand
Strand 2	A	492	494	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	473	474	first strand
Strand 2	A	488	489	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	653	655	first strand
Strand 2	A	691	694	parallel
Strand 3	A	671	675	anti-parallel
Strand 4	A	664	665	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	711	715	first strand
Strand 2	A	1072	1077	anti-parallel
Strand 3	A	1094	1097	anti-parallel
Strand 4	A	1102	1105	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	718	728	first strand
Strand 2	A	1059	1069	anti-parallel
Strand 3	A	1047	1056	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	734	736	first strand
Strand 2	A	858	860	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	788	789	first strand
Strand 2	D	702	703	parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1120	1122	first strand
Strand 2	A	1087	1090	anti-parallel
Strand 3	A	1081	1082	anti-parallel
Strand 4	A	1133	1134	parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	131	133	first strand
Strand 2	C	142	143	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	262	263	first strand
Strand 2	C	487	488	parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	347	352	first strand
Strand 2	C	355	359	anti-parallel

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There are 7 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	27	31	first strand
Strand 2	D	60	64	anti-parallel
Strand 3	D	264	267	anti-parallel
Strand 4	D	90	96	anti-parallel
Strand 5	D	186	197	anti-parallel
Strand 6	D	200	212	anti-parallel
Strand 7	D	224	229	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	48	55	first strand
Strand 2	D	271	279	anti-parallel
Strand 3	D	285	290	anti-parallel

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There are 6 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	84	85	first strand
Strand 2	D	237	241	anti-parallel
Strand 3	D	103	107	anti-parallel
Strand 4	D	116	121	anti-parallel
Strand 5	D	126	135	anti-parallel
Strand 6	D	160	171	anti-parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	311	318	first strand
Strand 2	D	593	599	anti-parallel
Strand 3	D	609	612	anti-parallel
Strand 4	D	649	651	anti-parallel
Strand 5	D	642	644	anti-parallel

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There are 6 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	325	328	first strand
Strand 2	D	538	543	parallel
Strand 3	D	547	554	anti-parallel
Strand 4	D	584	588	anti-parallel
Strand 5	D	573	577	anti-parallel
Strand 6	D	565	567	anti-parallel

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There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	354	358	first strand
Strand 2	D	394	403	anti-parallel
Strand 3	D	507	516	anti-parallel
Strand 4	D	432	437	anti-parallel
Strand 5	D	376	379	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	452	454	first strand
Strand 2	D	492	494	anti-parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	654	655	first strand
Strand 2	D	691	696	parallel
Strand 3	D	670	675	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	711	715	first strand
Strand 2	D	1072	1077	anti-parallel
Strand 3	D	1094	1097	anti-parallel
Strand 4	D	1102	1105	anti-parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	718	728	first strand
Strand 2	D	1059	1069	anti-parallel
Strand 3	D	1047	1056	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	733	736	first strand
Strand 2	D	858	861	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	787	788	first strand
Strand 2	B	701	702	parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1120	1122	first strand
Strand 2	D	1087	1090	anti-parallel
Strand 3	D	1081	1082	anti-parallel
Strand 4	D	1133	1134	parallel

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There are 7 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	28	31	first strand
Strand 2	B	60	67	anti-parallel
Strand 3	B	263	269	anti-parallel
Strand 4	B	90	95	anti-parallel
Strand 5	B	188	197	anti-parallel
Strand 6	B	200	209	anti-parallel
Strand 7	B	224	230	anti-parallel

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There are 3 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	48	55	first strand
Strand 2	B	271	279	anti-parallel
Strand 3	B	285	290	anti-parallel

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There are 3 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	84	85	first strand
Strand 2	B	237	244	anti-parallel
Strand 3	B	101	107	anti-parallel

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There are 4 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	84	85	first strand
Strand 2	B	237	244	anti-parallel
Strand 3	B	140	142	parallel
Strand 4	B	156	158	anti-parallel

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There are 3 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	116	121	first strand
Strand 2	B	126	133	anti-parallel
Strand 3	B	163	171	anti-parallel

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There are 5 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	311	319	first strand
Strand 2	B	592	599	anti-parallel
Strand 3	B	609	612	anti-parallel
Strand 4	B	648	651	anti-parallel
Strand 5	B	642	645	anti-parallel

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There are 5 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	325	327	first strand
Strand 2	B	538	542	parallel
Strand 3	B	547	554	anti-parallel
Strand 4	B	584	588	anti-parallel
Strand 5	B	575	577	anti-parallel

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There are 5 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	354	358	first strand
Strand 2	B	394	402	anti-parallel
Strand 3	B	508	516	anti-parallel
Strand 4	B	432	437	anti-parallel
Strand 5	B	376	379	anti-parallel

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There are 2 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	361	362	first strand
Strand 2	B	524	525	parallel

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There are 4 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	654	655	first strand
Strand 2	B	691	696	parallel
Strand 3	B	670	675	anti-parallel
Strand 4	B	664	667	anti-parallel

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There are 2 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	711	715	first strand
Strand 2	B	1072	1076	anti-parallel

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There are 3 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	718	728	first strand
Strand 2	B	1059	1069	anti-parallel
Strand 3	B	1047	1056	anti-parallel

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There are 2 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	733	736	first strand
Strand 2	B	858	861	anti-parallel

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There are 4 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1120	1122	first strand
Strand 2	B	1087	1090	anti-parallel
Strand 3	B	1081	1082	anti-parallel
Strand 4	B	1133	1134	parallel

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There are 2 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1094	1097	first strand
Strand 2	B	1102	1105	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7VXM

Analysis of interatomic Contacts of Structural Units in PDB entry:
7VXM