Analysis of interatomic Contacts of Structural Units in PDB entry:
7VXN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7VXN entry

There are 3 chains in PDB entry 7VXN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 60THR 277
B
 ARG 12ASN 255
C
 PRO 3SER 232
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 7VXN. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
63 68Right-handed alpha
Helix 2
AA2
A
97 105Right-handed alpha
Helix 3
AA3
A
157 161Right-handed 310
Helix 4
AA4
A
208 212Right-handed 310
Helix 5
AA5
B
57 61Right-handed 310
Helix 6
AA6
B
82 86Right-handed alpha
Helix 7
AA7
B
89 99Right-handed alpha
Helix 8
AA8
B
142 147Right-handed alpha
Helix 9
AA9
C
43 48Right-handed alpha
Helix 10
AB1
C
58 68Right-handed 310
Helix 11
AB2
C
98 105Right-handed alpha
Helix 12
AB3
C
144 150Right-handed alpha
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There are 10 sheets in PDB entry 7VXN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
72 80first strand
Strand 2
A
229 237anti-parallel
Strand 3
A
107 124anti-parallel
Strand 4
A
189 190anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
177 180first strand
Strand 2
A
107 124anti-parallel
Strand 3
A
240 247anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
88 91first strand
Strand 2
A
215 220anti-parallel
Strand 3
A
138 144anti-parallel
Strand 4
A
167 170anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
13 18first strand
Strand 2
B
21 26anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
31 32first strand
Strand 2
B
199 204parallel
Strand 3
B
106 112anti-parallel
Strand 4
B
241 247anti-parallel
Strand 5
B
64 71anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
78 81first strand
Strand 2
B
221 226anti-parallel
Strand 3
B
121 128anti-parallel
Strand 4
B
189 193anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
100 103first strand
Strand 2
B
253 255anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
51 52first strand
Strand 2
C
208 225anti-parallel
Strand 3
C
70 72anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
51 52first strand
Strand 2
C
208 225anti-parallel
Strand 3
C
107 121anti-parallel
Strand 4
C
163 168anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
81 86first strand
Strand 2
C
189 199anti-parallel
Strand 3
C
127 135anti-parallel
Strand 4
C
152 157anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il