Analysis of interatomic Contacts of Structural Units in PDB entry:
7VXY

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7VXY entry

There are 6 chains in PDB entry 7VXY (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 7	GLU 45
B	THR 18	ARG 170
C	ASP 7	VAL 44
D	VAL 13	GLU 173
E	LYS 2	LYS 2
E	ARG 4	ARG 4

There are 3 helices in PDB entry 7VXY. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	50	54	Right-handed alpha
Helix 2	AA2	B	131	135	Right-handed 310
Helix 3	AA3	D	49	54	Right-handed alpha

There are 6 sheets in PDB entry 7VXY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 13 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	8	14	first strand
Strand 2	B	21	27	anti-parallel
Strand 3	B	34	42	anti-parallel
Strand 4	B	45	49	anti-parallel
Strand 5	B	76	79	anti-parallel
Strand 6	B	67	71	anti-parallel
Strand 7	D	67	71	anti-parallel
Strand 8	D	76	79	anti-parallel
Strand 9	D	45	48	anti-parallel
Strand 10	D	35	42	anti-parallel
Strand 11	D	21	26	anti-parallel
Strand 12	C	8	14	anti-parallel
Strand 13	D	58	59	parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	23	24	first strand
Strand 2	B	107	111	parallel
Strand 3	B	95	99	anti-parallel
Strand 4	B	138	140	anti-parallel
Strand 5	B	146	149	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	41	43	first strand
Strand 2	A	30	35	anti-parallel
Strand 3	B	114	118	parallel
Strand 4	B	121	126	anti-parallel
Strand 5	B	161	164	anti-parallel
Strand 6	B	153	155	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	60	first strand
Strand 2	B	63	65	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	41	43	first strand
Strand 2	C	30	35	anti-parallel
Strand 3	D	114	118	parallel
Strand 4	D	121	126	anti-parallel
Strand 5	D	161	164	anti-parallel
Strand 6	D	153	155	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	107	111	first strand
Strand 2	D	95	99	anti-parallel
Strand 3	D	138	140	anti-parallel
Strand 4	D	146	149	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7VXY

Analysis of interatomic Contacts of Structural Units in PDB entry:
7VXY