Analysis of interatomic Contacts of Structural Units in PDB entry:
7VY1

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7VY1 entry

There are 29 chains in PDB entry 7VY1 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
Q	ALA 34	LYS 73
S	MET 1	ASP 70
U	ALA 2	LEU 84
V	ALA 2	VAL 141
W	GLY 32	THR 144
X	SER 69	GLU 156
Y	GLY 36	ASP 105
Z	GLU 8	GLN 91
a	HIS 50	ASN 189
b	SER 2	HIS 127
c	HIS 31	ILE 186
d	PRO 2	ALA 176
e	PRO 48	ASP 154
f	PRO 35	GLU 76
g	THR 2	ARG 122
h	PRO 2	PRO 106
i	MET 1	ASN 347
j	MET 1	TRP 113
k	MET 1	CYS 98
l	MET 1	ASN 603
m	MET 1	ASN 175
n	ASN 3	LYS 58
o	SER 2	TYR 129
p	ALA 2	MET 179
r	MET 1	TYR 459
s	MET 1	SER 318
u	PRO 2	MET 172
v	GLY 2	GLY 125
w	LEU 36	LYS 355

There are213 helices in PDB entry 7VY1. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	Q	40	45	Right-handed alpha
Helix 2	AA2	Q	46	49	Right-handed 310
Helix 3	AA3	Q	56	61	Right-handed 310
Helix 4	AA4	S	1	4	Right-handed 310
Helix 5	AA5	S	5	30	Right-handed alpha
Helix 6	AA6	S	43	56	Right-handed alpha
Helix 7	AA7	S	65	70	Right-handed 310
Helix 8	AA8	U	3	14	Right-handed alpha
Helix 9	AA9	U	16	32	Right-handed alpha
Helix 10	AB1	U	33	35	Right-handed 310
Helix 11	AB2	U	38	48	Right-handed alpha
Helix 12	AB3	U	78	84	Right-handed alpha
Helix 13	AB4	V	3	12	Right-handed alpha
Helix 14	AB5	V	17	44	Right-handed alpha
Helix 15	AB6	V	48	82	Right-handed alpha
Helix 16	AB7	V	86	106	Right-handed alpha
Helix 17	AB8	V	107	132	Right-handed alpha
Helix 18	AB9	W	33	98	Right-handed alpha
Helix 19	AC1	W	120	125	Right-handed alpha
Helix 20	AC2	W	129	143	Right-handed alpha
Helix 21	AC3	X	75	89	Right-handed alpha
Helix 22	AC4	X	111	127	Right-handed alpha
Helix 23	AC5	X	131	136	Right-handed alpha
Helix 24	AC6	X	140	153	Right-handed alpha
Helix 25	AC7	Y	51	76	Right-handed alpha
Helix 26	AC8	Y	77	82	Right-handed alpha
Helix 27	AC9	Y	88	92	Right-handed 310
Helix 28	AD1	Z	28	40	Right-handed alpha
Helix 29	AD2	Z	46	53	Right-handed 310
Helix 30	AD3	Z	55	59	Right-handed 310
Helix 31	AD4	Z	62	68	Right-handed alpha
Helix 32	AD5	Z	70	90	Right-handed alpha
Helix 33	AD6	a	61	93	Right-handed alpha
Helix 34	AD7	a	115	126	Right-handed alpha
Helix 35	AD8	a	128	164	Right-handed alpha
Helix 36	AD9	a	175	179	Right-handed 310
Helix 37	AE1	b	5	26	Right-handed alpha
Helix 38	AE2	b	65	74	Right-handed alpha
Helix 39	AE3	b	75	89	Right-handed alpha
Helix 40	AE4	c	33	37	Right-handed 310
Helix 41	AE5	c	44	55	Right-handed alpha
Helix 42	AE6	c	58	62	Right-handed 310
Helix 43	AE7	c	108	112	Right-handed 310
Helix 44	AE8	c	125	150	Right-handed alpha
Helix 45	AE9	d	28	41	Right-handed alpha
Helix 46	AF1	d	41	58	Right-handed alpha
Helix 47	AF2	d	73	77	Right-handed 310
Helix 48	AF3	d	81	117	Right-handed alpha
Helix 49	AF4	d	120	125	Right-handed alpha
Helix 50	AF5	d	125	144	Right-handed alpha
Helix 51	AF6	d	151	176	Right-handed alpha
Helix 52	AF7	e	79	95	Right-handed alpha
Helix 53	AF8	e	97	108	Right-handed alpha
Helix 54	AF9	e	114	132	Right-handed alpha
Helix 55	AG1	f	40	73	Right-handed alpha
Helix 56	AG2	g	3	7	Right-handed 310
Helix 57	AG3	g	17	23	Right-handed 310
Helix 58	AG4	g	30	51	Right-handed alpha
Helix 59	AG5	g	59	99	Right-handed alpha
Helix 60	AG6	g	110	114	Right-handed 310
Helix 61	AG7	h	5	11	Right-handed alpha
Helix 62	AG8	h	25	29	Right-handed 310
Helix 63	AG9	h	33	44	Right-handed alpha
Helix 64	AH1	h	48	56	Right-handed alpha
Helix 65	AH2	h	56	69	Right-handed alpha
Helix 66	AH3	h	69	90	Right-handed alpha
Helix 67	AH4	h	95	100	Right-handed 310
Helix 68	AH5	i	2	23	Right-handed alpha
Helix 69	AH6	i	25	45	Right-handed alpha
Helix 70	AH7	i	49	81	Right-handed alpha
Helix 71	AH8	i	91	107	Right-handed alpha
Helix 72	AH9	i	113	122	Right-handed alpha
Helix 73	AI1	i	123	133	Right-handed alpha
Helix 74	AI2	i	135	145	Right-handed alpha
Helix 75	AI3	i	150	172	Right-handed alpha
Helix 76	AI4	i	174	192	Right-handed alpha
Helix 77	AI5	i	197	222	Right-handed alpha
Helix 78	AI6	i	226	232	Right-handed alpha
Helix 79	AI7	i	233	236	Right-handed 310
Helix 80	AI8	i	237	252	Right-handed alpha
Helix 81	AI9	i	259	273	Right-handed alpha
Helix 82	AJ1	i	276	301	Right-handed alpha
Helix 83	AJ2	i	310	315	Right-handed alpha
Helix 84	AJ3	i	325	335	Right-handed alpha
Helix 85	AJ4	i	336	346	Right-handed 310
Helix 86	AJ5	j	2	24	Right-handed alpha
Helix 87	AJ6	j	25	27	Right-handed 310
Helix 88	AJ7	j	52	73	Right-handed alpha
Helix 89	AJ8	j	74	79	Right-handed alpha
Helix 90	AJ9	j	83	108	Right-handed alpha
Helix 91	AK1	k	2	22	Right-handed alpha
Helix 92	AK2	k	25	51	Right-handed alpha
Helix 93	AK3	k	53	56	Right-handed 310
Helix 94	AK4	k	57	86	Right-handed alpha
Helix 95	AK5	k	89	93	Right-handed 310
Helix 96	AK6	l	2	15	Right-handed alpha
Helix 97	AK7	l	16	22	Right-handed alpha
Helix 98	AK8	l	23	24	Right-handed 310
Helix 99	AK9	l	25	29	Right-handed 310
Helix 100	AL1	l	31	58	Right-handed alpha
Helix 101	AL2	l	83	108	Right-handed alpha
Helix 102	AL3	l	113	134	Right-handed alpha
Helix 103	AL4	l	136	156	Right-handed alpha
Helix 104	AL5	l	161	194	Right-handed alpha
Helix 105	AL6	l	197	205	Right-handed alpha
Helix 106	AL7	l	209	224	Right-handed alpha
Helix 107	AL8	l	226	230	Right-handed 310
Helix 108	AL9	l	231	236	Right-handed alpha
Helix 109	AM1	l	237	239	Right-handed 310
Helix 110	AM2	l	240	247	Right-handed alpha
Helix 111	AM3	l	254	263	Right-handed alpha
Helix 112	AM4	l	263	268	Right-handed alpha
Helix 113	AM5	l	271	294	Right-handed alpha
Helix 114	AM6	l	297	319	Right-handed alpha
Helix 115	AM7	l	321	350	Right-handed alpha
Helix 116	AM8	l	355	359	Right-handed 310
Helix 117	AM9	l	366	382	Right-handed alpha
Helix 118	AN1	l	386	401	Right-handed alpha
Helix 119	AN2	l	405	432	Right-handed alpha
Helix 120	AN3	l	447	471	Right-handed alpha
Helix 121	AN4	l	483	488	Right-handed alpha
Helix 122	AN5	l	488	507	Right-handed alpha
Helix 123	AN6	l	508	510	Right-handed 310
Helix 124	AN7	l	517	525	Right-handed alpha
Helix 125	AN8	l	528	534	Right-handed alpha
Helix 126	AN9	l	535	548	Right-handed alpha
Helix 127	AO1	l	556	562	Right-handed alpha
Helix 128	AO2	l	562	579	Right-handed alpha
Helix 129	AO3	l	583	602	Right-handed alpha
Helix 130	AO4	m	4	22	Right-handed alpha
Helix 131	AO5	m	25	48	Right-handed alpha
Helix 132	AO6	m	49	75	Right-handed alpha
Helix 133	AO7	m	137	145	Right-handed alpha
Helix 134	AO8	m	150	174	Right-handed alpha
Helix 135	AO9	n	7	12	Right-handed alpha
Helix 136	AP1	n	15	33	Right-handed alpha
Helix 137	AP2	o	26	52	Right-handed alpha
Helix 138	AP3	o	62	74	Right-handed alpha
Helix 139	AP4	o	83	119	Right-handed alpha
Helix 140	AP5	p	11	31	Right-handed alpha
Helix 141	AP6	p	33	50	Right-handed alpha
Helix 142	AP7	p	56	63	Right-handed alpha
Helix 143	AP8	p	65	74	Right-handed alpha
Helix 144	AP9	p	92	97	Right-handed 310
Helix 145	AQ1	p	100	107	Right-handed 310
Helix 146	AQ2	p	108	114	Right-handed alpha
Helix 147	AQ3	p	115	144	Right-handed alpha
Helix 148	AQ4	p	167	172	Right-handed alpha
Helix 149	AQ5	r	2	17	Right-handed alpha
Helix 150	AQ6	r	22	39	Right-handed alpha
Helix 151	AQ7	r	40	43	Right-handed 310
Helix 152	AQ8	r	61	81	Right-handed alpha
Helix 153	AQ9	r	88	112	Right-handed alpha
Helix 154	AR1	r	114	125	Right-handed alpha
Helix 155	AR2	r	126	136	Right-handed alpha
Helix 156	AR3	r	141	172	Right-handed alpha
Helix 157	AR4	r	175	182	Right-handed alpha
Helix 158	AR5	r	189	207	Right-handed alpha
Helix 159	AR6	r	214	223	Right-handed alpha
Helix 160	AR7	r	224	234	Right-handed alpha
Helix 161	AR8	r	236	247	Right-handed alpha
Helix 162	AR9	r	253	258	Right-handed alpha
Helix 163	AS1	r	258	278	Right-handed alpha
Helix 164	AS2	r	281	304	Right-handed alpha
Helix 165	AS3	r	305	338	Right-handed alpha
Helix 166	AS4	r	347	352	Right-handed alpha
Helix 167	AS5	r	352	367	Right-handed alpha
Helix 168	AS6	r	372	389	Right-handed alpha
Helix 169	AS7	r	391	416	Right-handed alpha
Helix 170	AS8	r	430	448	Right-handed alpha
Helix 171	AS9	r	449	455	Right-handed 310
Helix 172	AT1	s	2	32	Right-handed alpha
Helix 173	AT2	s	46	57	Right-handed alpha
Helix 174	AT3	s	67	85	Right-handed alpha
Helix 175	AT4	s	100	112	Right-handed alpha
Helix 176	AT5	s	112	123	Right-handed alpha
Helix 177	AT6	s	125	155	Right-handed alpha
Helix 178	AT7	s	163	169	Right-handed alpha
Helix 179	AT8	s	173	178	Right-handed alpha
Helix 180	AT9	s	178	193	Right-handed alpha
Helix 181	AU1	s	218	243	Right-handed alpha
Helix 182	AU2	s	251	277	Right-handed alpha
Helix 183	AU3	s	281	312	Right-handed alpha
Helix 184	AU4	u	21	28	Right-handed alpha
Helix 185	AU5	u	28	36	Right-handed alpha
Helix 186	AU6	u	36	51	Right-handed alpha
Helix 187	AU7	u	52	55	Right-handed 310
Helix 188	AU8	u	56	78	Right-handed alpha
Helix 189	AU9	u	78	92	Right-handed alpha
Helix 190	AV1	u	100	115	Right-handed alpha
Helix 191	AV2	v	3	11	Right-handed alpha
Helix 192	AV3	v	12	16	Right-handed 310
Helix 193	AV4	v	26	30	Right-handed 310
Helix 194	AV5	v	42	50	Right-handed alpha
Helix 195	AV6	v	59	73	Right-handed alpha
Helix 196	AV7	v	81	125	Right-handed alpha
Helix 197	AV8	w	39	46	Right-handed alpha
Helix 198	AV9	w	69	82	Right-handed alpha
Helix 199	AW1	w	92	98	Right-handed alpha
Helix 200	AW2	w	113	120	Right-handed alpha
Helix 201	AW3	w	126	154	Right-handed alpha
Helix 202	AW4	w	166	176	Right-handed alpha
Helix 203	AW5	w	180	196	Right-handed alpha
Helix 204	AW6	w	210	222	Right-handed alpha
Helix 205	AW7	w	225	229	Right-handed 310
Helix 206	AW8	w	230	244	Right-handed alpha
Helix 207	AW9	w	244	251	Right-handed alpha
Helix 208	AX1	w	265	276	Right-handed alpha
Helix 209	AX2	w	287	299	Right-handed alpha
Helix 210	AX3	w	300	305	Right-handed alpha
Helix 211	AX4	w	306	310	Right-handed 310
Helix 212	AX5	w	320	333	Right-handed alpha
Helix 213	AX6	w	351	355	Right-handed 310

There are 6 sheets in PDB entry 7VY1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	57	58	first strand
Strand 2	u	130	131	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	97	98	first strand
Strand 2	d	62	63	parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	97	99	first strand
Strand 2	l	61	71	anti-parallel
Strand 3	l	74	81	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	i	307	308	first strand
Strand 2	w	318	319	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	r	50	51	first strand
Strand 2	r	57	58	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	w	84	86	first strand
Strand 2	w	157	159	parallel
Strand 3	w	60	64	parallel
Strand 4	w	203	208	parallel
Strand 5	w	254	259	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7VY1

Analysis of interatomic Contacts of Structural Units in PDB entry:
7VY1