Analysis of interatomic Contacts of Structural Units in PDB entry:
7VY9

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7VY9 entry

There are 29 chains in PDB entry 7VY9 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
Q	ALA 34	VAL 77
S	MET 1	ASP 70
U	ALA 2	LEU 84
V	ALA 2	VAL 141
W	GLY 32	THR 144
X	SER 69	GLU 156
Y	VAL 38	GLU 104
Z	SER 12	GLN 91
a	LYS 52	ASN 189
b	SER 2	HIS 127
c	HIS 31	ILE 186
d	PRO 2	ALA 176
e	PRO 51	ASP 154
f	LYS 28	GLU 76
g	THR 2	ARG 122
h	PRO 2	PRO 106
i	MET 1	ASN 347
j	MET 1	GLU 115
k	MET 1	CYS 98
l	MET 1	GLU 606
m	MET 1	ASN 175
n	ASN 3	LYS 58
o	SER 2	TYR 129
p	ALA 2	MET 179
r	MET 1	TYR 459
s	MET 1	SER 318
u	PRO 2	MET 172
v	GLY 2	GLY 125
w	LEU 36	LYS 355

There are219 helices in PDB entry 7VY9. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	Q	40	45	Right-handed alpha
Helix 2	AA2	Q	46	48	Right-handed 310
Helix 3	AA3	S	1	4	Right-handed 310
Helix 4	AA4	S	5	30	Right-handed alpha
Helix 5	AA5	S	41	56	Right-handed alpha
Helix 6	AA6	S	65	70	Right-handed 310
Helix 7	AA7	U	3	16	Right-handed alpha
Helix 8	AA8	U	16	32	Right-handed alpha
Helix 9	AA9	U	33	36	Right-handed 310
Helix 10	AB1	U	38	48	Right-handed alpha
Helix 11	AB2	U	78	84	Right-handed alpha
Helix 12	AB3	V	3	11	Right-handed alpha
Helix 13	AB4	V	17	44	Right-handed alpha
Helix 14	AB5	V	48	82	Right-handed alpha
Helix 15	AB6	V	86	106	Right-handed alpha
Helix 16	AB7	V	107	132	Right-handed alpha
Helix 17	AB8	W	33	98	Right-handed alpha
Helix 18	AB9	W	99	101	Right-handed 310
Helix 19	AC1	W	129	143	Right-handed alpha
Helix 20	AC2	X	75	89	Right-handed alpha
Helix 21	AC3	X	111	127	Right-handed alpha
Helix 22	AC4	X	131	136	Right-handed alpha
Helix 23	AC5	X	140	152	Right-handed alpha
Helix 24	AC6	Y	51	76	Right-handed alpha
Helix 25	AC7	Y	77	82	Right-handed alpha
Helix 26	AC8	Y	88	92	Right-handed 310
Helix 27	AC9	Z	18	22	Right-handed 310
Helix 28	AD1	Z	27	38	Right-handed alpha
Helix 29	AD2	Z	50	55	Right-handed alpha
Helix 30	AD3	Z	62	68	Right-handed alpha
Helix 31	AD4	Z	70	87	Right-handed alpha
Helix 32	AD5	Z	88	90	Right-handed 310
Helix 33	AD6	a	61	93	Right-handed alpha
Helix 34	AD7	a	108	113	Right-handed 310
Helix 35	AD8	a	115	126	Right-handed alpha
Helix 36	AD9	a	128	164	Right-handed alpha
Helix 37	AE1	a	175	179	Right-handed 310
Helix 38	AE2	b	5	26	Right-handed alpha
Helix 39	AE3	b	68	75	Right-handed alpha
Helix 40	AE4	b	75	89	Right-handed alpha
Helix 41	AE5	c	33	37	Right-handed 310
Helix 42	AE6	c	44	55	Right-handed alpha
Helix 43	AE7	c	82	86	Right-handed 310
Helix 44	AE8	c	108	112	Right-handed 310
Helix 45	AE9	c	128	150	Right-handed alpha
Helix 46	AF1	d	28	58	Right-handed alpha
Helix 47	AF2	d	73	77	Right-handed 310
Helix 48	AF3	d	81	118	Right-handed alpha
Helix 49	AF4	d	120	125	Right-handed alpha
Helix 50	AF5	d	125	144	Right-handed alpha
Helix 51	AF6	d	151	175	Right-handed alpha
Helix 52	AF7	e	65	70	Right-handed alpha
Helix 53	AF8	e	79	95	Right-handed alpha
Helix 54	AF9	e	97	108	Right-handed alpha
Helix 55	AG1	e	115	132	Right-handed alpha
Helix 56	AG2	e	143	147	Right-handed 310
Helix 57	AG3	f	40	73	Right-handed alpha
Helix 58	AG4	g	17	23	Right-handed 310
Helix 59	AG5	g	30	51	Right-handed alpha
Helix 60	AG6	g	59	99	Right-handed alpha
Helix 61	AG7	g	100	103	Right-handed 310
Helix 62	AG8	h	5	11	Right-handed alpha
Helix 63	AG9	h	15	19	Right-handed 310
Helix 64	AH1	h	25	29	Right-handed 310
Helix 65	AH2	h	33	45	Right-handed alpha
Helix 66	AH3	h	48	56	Right-handed alpha
Helix 67	AH4	h	56	69	Right-handed alpha
Helix 68	AH5	h	69	90	Right-handed alpha
Helix 69	AH6	h	95	99	Right-handed 310
Helix 70	AH7	i	2	23	Right-handed alpha
Helix 71	AH8	i	25	45	Right-handed alpha
Helix 72	AH9	i	49	81	Right-handed alpha
Helix 73	AI1	i	91	107	Right-handed alpha
Helix 74	AI2	i	113	122	Right-handed alpha
Helix 75	AI3	i	123	133	Right-handed alpha
Helix 76	AI4	i	135	145	Right-handed alpha
Helix 77	AI5	i	146	149	Right-handed 310
Helix 78	AI6	i	150	171	Right-handed alpha
Helix 79	AI7	i	174	193	Right-handed alpha
Helix 80	AI8	i	197	222	Right-handed alpha
Helix 81	AI9	i	226	231	Right-handed alpha
Helix 82	AJ1	i	232	236	Right-handed 310
Helix 83	AJ2	i	237	253	Right-handed alpha
Helix 84	AJ3	i	259	273	Right-handed alpha
Helix 85	AJ4	i	276	301	Right-handed alpha
Helix 86	AJ5	i	310	315	Right-handed alpha
Helix 87	AJ6	i	325	335	Right-handed alpha
Helix 88	AJ7	i	336	347	Right-handed 310
Helix 89	AJ8	j	2	24	Right-handed alpha
Helix 90	AJ9	j	55	73	Right-handed alpha
Helix 91	AK1	j	74	80	Right-handed alpha
Helix 92	AK2	j	83	108	Right-handed alpha
Helix 93	AK3	k	2	21	Right-handed alpha
Helix 94	AK4	k	25	51	Right-handed alpha
Helix 95	AK5	k	54	56	Right-handed 310
Helix 96	AK6	k	57	86	Right-handed alpha
Helix 97	AK7	k	94	98	Right-handed 310
Helix 98	AK8	l	2	14	Right-handed alpha
Helix 99	AK9	l	16	21	Right-handed alpha
Helix 100	AL1	l	22	24	Right-handed 310
Helix 101	AL2	l	31	58	Right-handed alpha
Helix 102	AL3	l	83	108	Right-handed alpha
Helix 103	AL4	l	113	134	Right-handed alpha
Helix 104	AL5	l	136	156	Right-handed alpha
Helix 105	AL6	l	161	194	Right-handed alpha
Helix 106	AL7	l	197	205	Right-handed alpha
Helix 107	AL8	l	209	225	Right-handed alpha
Helix 108	AL9	l	226	230	Right-handed 310
Helix 109	AM1	l	231	236	Right-handed alpha
Helix 110	AM2	l	237	239	Right-handed 310
Helix 111	AM3	l	240	247	Right-handed alpha
Helix 112	AM4	l	254	263	Right-handed alpha
Helix 113	AM5	l	263	268	Right-handed alpha
Helix 114	AM6	l	270	293	Right-handed alpha
Helix 115	AM7	l	297	319	Right-handed alpha
Helix 116	AM8	l	321	350	Right-handed alpha
Helix 117	AM9	l	355	359	Right-handed 310
Helix 118	AN1	l	366	381	Right-handed alpha
Helix 119	AN2	l	386	401	Right-handed alpha
Helix 120	AN3	l	405	432	Right-handed alpha
Helix 121	AN4	l	447	470	Right-handed alpha
Helix 122	AN5	l	483	488	Right-handed alpha
Helix 123	AN6	l	488	508	Right-handed alpha
Helix 124	AN7	l	517	525	Right-handed alpha
Helix 125	AN8	l	528	534	Right-handed alpha
Helix 126	AN9	l	535	548	Right-handed alpha
Helix 127	AO1	l	556	562	Right-handed alpha
Helix 128	AO2	l	562	579	Right-handed alpha
Helix 129	AO3	l	583	602	Right-handed alpha
Helix 130	AO4	m	4	22	Right-handed alpha
Helix 131	AO5	m	24	46	Right-handed alpha
Helix 132	AO6	m	49	75	Right-handed alpha
Helix 133	AO7	m	86	110	Right-handed alpha
Helix 134	AO8	m	137	149	Right-handed alpha
Helix 135	AO9	m	150	172	Right-handed alpha
Helix 136	AP1	n	4	12	Right-handed alpha
Helix 137	AP2	n	15	33	Right-handed alpha
Helix 138	AP3	o	19	23	Right-handed 310
Helix 139	AP4	o	26	52	Right-handed alpha
Helix 140	AP5	o	62	74	Right-handed alpha
Helix 141	AP6	o	76	80	Right-handed 310
Helix 142	AP7	o	83	119	Right-handed alpha
Helix 143	AP8	p	11	31	Right-handed alpha
Helix 144	AP9	p	33	51	Right-handed alpha
Helix 145	AQ1	p	56	75	Right-handed alpha
Helix 146	AQ2	p	94	98	Right-handed 310
Helix 147	AQ3	p	100	107	Right-handed 310
Helix 148	AQ4	p	108	114	Right-handed alpha
Helix 149	AQ5	p	115	143	Right-handed alpha
Helix 150	AQ6	p	167	172	Right-handed alpha
Helix 151	AQ7	r	2	18	Right-handed alpha
Helix 152	AQ8	r	22	39	Right-handed alpha
Helix 153	AQ9	r	40	43	Right-handed 310
Helix 154	AR1	r	61	84	Right-handed alpha
Helix 155	AR2	r	88	112	Right-handed alpha
Helix 156	AR3	r	114	125	Right-handed alpha
Helix 157	AR4	r	125	137	Right-handed alpha
Helix 158	AR5	r	141	172	Right-handed alpha
Helix 159	AR6	r	175	182	Right-handed alpha
Helix 160	AR7	r	189	207	Right-handed alpha
Helix 161	AR8	r	214	223	Right-handed alpha
Helix 162	AR9	r	224	234	Right-handed alpha
Helix 163	AS1	r	236	251	Right-handed alpha
Helix 164	AS2	r	253	276	Right-handed alpha
Helix 165	AS3	r	277	279	Right-handed 310
Helix 166	AS4	r	281	304	Right-handed alpha
Helix 167	AS5	r	305	338	Right-handed alpha
Helix 168	AS6	r	347	352	Right-handed alpha
Helix 169	AS7	r	352	367	Right-handed alpha
Helix 170	AS8	r	372	389	Right-handed alpha
Helix 171	AS9	r	391	416	Right-handed alpha
Helix 172	AT1	r	430	450	Right-handed alpha
Helix 173	AT2	r	451	455	Right-handed 310
Helix 174	AT3	s	2	32	Right-handed alpha
Helix 175	AT4	s	41	45	Right-handed 310
Helix 176	AT5	s	46	58	Right-handed alpha
Helix 177	AT6	s	67	85	Right-handed alpha
Helix 178	AT7	s	100	123	Right-handed alpha
Helix 179	AT8	s	125	158	Right-handed alpha
Helix 180	AT9	s	161	169	Right-handed alpha
Helix 181	AU1	s	173	177	Right-handed 310
Helix 182	AU2	s	178	193	Right-handed alpha
Helix 183	AU3	s	209	213	Right-handed 310
Helix 184	AU4	s	216	243	Right-handed alpha
Helix 185	AU5	s	252	277	Right-handed alpha
Helix 186	AU6	s	281	292	Right-handed alpha
Helix 187	AU7	s	292	312	Right-handed alpha
Helix 188	AU8	u	9	14	Right-handed 310
Helix 189	AU9	u	21	36	Right-handed alpha
Helix 190	AV1	u	36	51	Right-handed alpha
Helix 191	AV2	u	52	55	Right-handed 310
Helix 192	AV3	u	56	78	Right-handed alpha
Helix 193	AV4	u	79	92	Right-handed alpha
Helix 194	AV5	u	101	114	Right-handed alpha
Helix 195	AV6	v	3	11	Right-handed alpha
Helix 196	AV7	v	12	16	Right-handed 310
Helix 197	AV8	v	42	50	Right-handed alpha
Helix 198	AV9	v	59	73	Right-handed alpha
Helix 199	AW1	v	81	124	Right-handed alpha
Helix 200	AW2	w	39	45	Right-handed alpha
Helix 201	AW3	w	69	82	Right-handed alpha
Helix 202	AW4	w	92	97	Right-handed alpha
Helix 203	AW5	w	113	120	Right-handed alpha
Helix 204	AW6	w	126	154	Right-handed alpha
Helix 205	AW7	w	162	176	Right-handed alpha
Helix 206	AW8	w	180	196	Right-handed alpha
Helix 207	AW9	w	210	222	Right-handed alpha
Helix 208	AX1	w	225	229	Right-handed 310
Helix 209	AX2	w	230	244	Right-handed alpha
Helix 210	AX3	w	244	251	Right-handed alpha
Helix 211	AX4	w	260	264	Right-handed alpha
Helix 212	AX5	w	265	275	Right-handed alpha
Helix 213	AX6	w	282	286	Right-handed 310
Helix 214	AX7	w	287	299	Right-handed alpha
Helix 215	AX8	w	300	306	Right-handed alpha
Helix 216	AX9	w	307	310	Right-handed 310
Helix 217	AY1	w	320	333	Right-handed alpha
Helix 218	AY2	w	344	348	Right-handed 310
Helix 219	AY3	w	351	355	Right-handed 310

There are 6 sheets in PDB entry 7VY9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	57	58	first strand
Strand 2	u	130	131	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	97	98	first strand
Strand 2	d	62	63	parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	97	99	first strand
Strand 2	l	61	70	anti-parallel
Strand 3	l	75	81	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	i	307	308	first strand
Strand 2	w	318	319	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	r	50	51	first strand
Strand 2	r	57	58	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	w	84	86	first strand
Strand 2	w	157	159	parallel
Strand 3	w	60	64	parallel
Strand 4	w	203	208	parallel
Strand 5	w	254	259	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7VY9

Analysis of interatomic Contacts of Structural Units in PDB entry:
7VY9