Analysis of interatomic Contacts of Structural Units in PDB entry:
7VYL

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7VYL entry

There are 5 chains in PDB entry 7VYL (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 13	THR 281
B	GLY 8	GLN 263
C	GLY 1	GLN 238
D	GLY 2	ASN 69
E	SER 21	VAL 136

There are 19 helices in PDB entry 7VYL. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	33	37	Right-handed 310
Helix 2	AA2	A	43	47	Right-handed 310
Helix 3	AA3	A	59	62	Right-handed 310
Helix 4	AA4	A	63	69	Right-handed alpha
Helix 5	AA5	A	98	105	Right-handed alpha
Helix 6	AA6	A	156	161	Right-handed 310
Helix 7	AA7	B	43	47	Right-handed 310
Helix 8	AA8	B	56	60	Right-handed 310
Helix 9	AA9	B	82	86	Right-handed alpha
Helix 10	AB1	B	89	98	Right-handed alpha
Helix 11	AB2	B	142	147	Right-handed alpha
Helix 12	AB3	B	171	175	Right-handed 310
Helix 13	AB4	B	180	187	Right-handed 310
Helix 14	AB5	C	43	48	Right-handed alpha
Helix 15	AB6	C	58	64	Right-handed 310
Helix 16	AB7	C	65	69	Right-handed 310
Helix 17	AB8	C	98	105	Right-handed alpha
Helix 18	AB9	C	144	150	Right-handed alpha
Helix 19	AC1	E	97	101	Right-handed 310

There are 13 sheets in PDB entry 7VYL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	31	32	first strand
Strand 2	C	163	168	anti-parallel
Strand 3	C	114	120	anti-parallel
Strand 4	C	208	216	anti-parallel
Strand 5	C	70	72	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	72	80	first strand
Strand 2	A	229	247	anti-parallel
Strand 3	A	107	124	anti-parallel
Strand 4	A	177	180	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	72	80	first strand
Strand 2	A	229	247	anti-parallel
Strand 3	C	39	40	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	87	91	first strand
Strand 2	A	215	220	anti-parallel
Strand 3	A	138	144	anti-parallel
Strand 4	A	166	170	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	14	18	first strand
Strand 2	B	21	25	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	32	33	first strand
Strand 2	B	199	204	parallel
Strand 3	B	99	111	anti-parallel
Strand 4	B	241	257	anti-parallel
Strand 5	B	64	65	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	32	33	first strand
Strand 2	B	199	204	parallel
Strand 3	B	99	111	anti-parallel
Strand 4	B	241	257	anti-parallel
Strand 5	B	69	71	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	153	154	first strand
Strand 2	B	78	81	anti-parallel
Strand 3	B	221	232	anti-parallel
Strand 4	B	119	128	anti-parallel
Strand 5	B	189	193	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	81	86	first strand
Strand 2	C	189	199	anti-parallel
Strand 3	C	127	135	anti-parallel
Strand 4	C	152	157	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	177	178	first strand
Strand 2	C	107	111	anti-parallel
Strand 3	C	221	225	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	4	7	first strand
Strand 2	D	26	29	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	26	30	first strand
Strand 2	E	127	136	parallel
Strand 3	E	117	124	anti-parallel
Strand 4	E	53	58	anti-parallel
Strand 5	E	73	74	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	38	39	first strand
Strand 2	E	105	106	anti-parallel
Strand 3	E	92	93	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7VYL

Analysis of interatomic Contacts of Structural Units in PDB entry:
7VYL