Analysis of interatomic Contacts of Structural Units in PDB entry:
7VYM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7VYM entry

There are 5 chains in PDB entry 7VYM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 13THR 279
B
 GLY 8HIS 262
C
 GLY 1PHE 237
D
 GLY 2ASN 69
E
 SER 21VAL 137
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 7VYM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
33 37Right-handed 310
Helix 2
AA2
A
43 48Right-handed 310
Helix 3
AA3
A
63 69Right-handed alpha
Helix 4
AA4
A
93 97Right-handed 310
Helix 5
AA5
A
98 106Right-handed alpha
Helix 6
AA6
A
156 161Right-handed 310
Helix 7
AA7
A
206 211Right-handed alpha
Helix 8
AA8
B
43 47Right-handed 310
Helix 9
AA9
B
82 86Right-handed alpha
Helix 10
AB1
B
89 98Right-handed alpha
Helix 11
AB2
B
181 187Right-handed 310
Helix 12
AB3
C
42 49Right-handed alpha
Helix 13
AB4
C
58 68Right-handed 310
Helix 14
AB5
C
92 97Right-handed alpha
Helix 15
AB6
C
98 105Right-handed alpha
Helix 16
AB7
C
144 151Right-handed alpha
Helix 17
AB8
D
49 53Right-handed 310
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There are 15 sheets in PDB entry 7VYM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
72 80first strand
Strand 2
A
230 237anti-parallel
Strand 3
A
107 121anti-parallel
Strand 4
A
189 190anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
177 180first strand
Strand 2
A
107 121anti-parallel
Strand 3
A
240 247anti-parallel
Strand 4
C
39 40anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
87 91first strand
Strand 2
A
215 220anti-parallel
Strand 3
A
138 144anti-parallel
Strand 4
A
166 170anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
14 18first strand
Strand 2
B
21 25anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
64 65first strand
Strand 2
B
242 257anti-parallel
Strand 3
B
69 70anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
64 65first strand
Strand 2
B
242 257anti-parallel
Strand 3
B
99 111anti-parallel
Strand 4
B
199 204anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
154 155first strand
Strand 2
B
77 81anti-parallel
Strand 3
B
221 225anti-parallel
Strand 4
B
119 128anti-parallel
Strand 5
B
189 193anti-parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
154 155first strand
Strand 2
B
77 81anti-parallel
Strand 3
B
221 225anti-parallel
Strand 4
B
119 128anti-parallel
Strand 5
B
229 232anti-parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
51 52first strand
Strand 2
C
207 214anti-parallel
Strand 3
C
70 73anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
51 52first strand
Strand 2
C
207 214anti-parallel
Strand 3
C
114 120anti-parallel
Strand 4
C
164 168anti-parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
81 86first strand
Strand 2
C
188 194anti-parallel
Strand 3
C
129 136anti-parallel
Strand 4
C
152 157anti-parallel
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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
177 178first strand
Strand 2
C
109 111anti-parallel
Strand 3
C
221 223anti-parallel
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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
4 7first strand
Strand 2
D
26 29anti-parallel
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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
26 30first strand
Strand 2
E
129 136parallel
Strand 3
E
116 123anti-parallel
Strand 4
E
54 59anti-parallel
Strand 5
E
70 74anti-parallel
Strand 6
E
79 80anti-parallel
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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
37 39first strand
Strand 2
E
105 107anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il