Analysis of interatomic Contacts of Structural Units in PDB entry:
7VYN

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7VYN entry

There are 19 chains in PDB entry 7VYN (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 26	GLN 458
B	THR 37	ARG 212
C	SER 41	ARG 196
E	GLY 14	PRO 128
F	LEU 14	ALA 99
G	SER 69	GLU 156
H	LEU 5	ILE 116
I	ALA 2	LEU 113
J	LEU 36	ILE 377
K	PHE 68	HIS 110
L	GLN 51	LYS 175
M	SER 29	ILE 718
N	GLU 2	LYS 145
O	GLY 33	LEU 249
P	THR 43	GLU 250
Q	SER 78	HIS 117
Q	GLY 119	ARG 463
T	GLY 28	HIS 123
W	ALA 3	SER 31

There are152 helices in PDB entry 7VYN. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	36	40	Right-handed 310
Helix 2	AA2	A	52	59	Right-handed alpha
Helix 3	AA3	A	64	71	Right-handed alpha
Helix 4	AA4	A	72	84	Right-handed alpha
Helix 5	AA5	A	94	101	Right-handed alpha
Helix 6	AA6	A	125	134	Right-handed alpha
Helix 7	AA7	A	134	150	Right-handed alpha
Helix 8	AA8	A	162	179	Right-handed alpha
Helix 9	AA9	A	204	207	Right-handed 310
Helix 10	AB1	A	208	217	Right-handed alpha
Helix 11	AB2	A	234	238	Right-handed 310
Helix 12	AB3	A	245	258	Right-handed alpha
Helix 13	AB4	A	258	264	Right-handed alpha
Helix 14	AB5	A	295	304	Right-handed alpha
Helix 15	AB6	A	310	312	Right-handed 310
Helix 16	AB7	A	329	333	Right-handed alpha
Helix 17	AB8	A	338	345	Right-handed alpha
Helix 18	AB9	A	362	378	Right-handed alpha
Helix 19	AC1	A	382	402	Right-handed alpha
Helix 20	AC2	A	405	420	Right-handed alpha
Helix 21	AC3	A	426	457	Right-handed alpha
Helix 22	AC4	B	49	63	Right-handed alpha
Helix 23	AC5	B	63	78	Right-handed alpha
Helix 24	AC6	B	117	123	Right-handed alpha
Helix 25	AC7	B	156	162	Right-handed alpha
Helix 26	AC8	B	180	182	Right-handed 310
Helix 27	AC9	B	186	209	Right-handed alpha
Helix 28	AD1	B	210	212	Right-handed 310
Helix 29	AD2	C	42	61	Right-handed alpha
Helix 30	AD3	C	71	81	Right-handed alpha
Helix 31	AD4	C	85	90	Right-handed 310
Helix 32	AD5	C	96	100	Right-handed 310
Helix 33	AD6	C	113	123	Right-handed alpha
Helix 34	AD7	C	134	140	Right-handed alpha
Helix 35	AD8	C	141	144	Right-handed 310
Helix 36	AD9	C	152	156	Right-handed 310
Helix 37	AE1	C	169	186	Right-handed alpha
Helix 38	AE2	C	188	196	Right-handed alpha
Helix 39	AE3	E	24	51	Right-handed alpha
Helix 40	AE4	E	55	70	Right-handed alpha
Helix 41	AE5	E	75	95	Right-handed alpha
Helix 42	AE6	E	99	105	Right-handed alpha
Helix 43	AE7	E	117	125	Right-handed alpha
Helix 44	AE8	F	27	29	Right-handed 310
Helix 45	AE9	F	30	40	Right-handed alpha
Helix 46	AF1	F	40	48	Right-handed alpha
Helix 47	AF2	F	83	96	Right-handed alpha
Helix 48	AF3	G	75	89	Right-handed alpha
Helix 49	AF4	G	111	127	Right-handed alpha
Helix 50	AF5	G	140	153	Right-handed alpha
Helix 51	AF6	H	19	36	Right-handed alpha
Helix 52	AF7	H	42	61	Right-handed alpha
Helix 53	AF8	H	64	73	Right-handed alpha
Helix 54	AF9	H	76	98	Right-handed alpha
Helix 55	AG1	I	5	17	Right-handed alpha
Helix 56	AG2	I	53	57	Right-handed 310
Helix 57	AG3	I	59	63	Right-handed 310
Helix 58	AG4	J	37	41	Right-handed 310
Helix 59	AG5	J	63	76	Right-handed alpha
Helix 60	AG6	J	87	98	Right-handed 310
Helix 61	AG7	J	112	121	Right-handed alpha
Helix 62	AG8	J	140	146	Right-handed alpha
Helix 63	AG9	J	146	160	Right-handed alpha
Helix 64	AH1	J	178	195	Right-handed alpha
Helix 65	AH2	J	213	219	Right-handed alpha
Helix 66	AH3	J	220	224	Right-handed 310
Helix 67	AH4	J	229	233	Right-handed 310
Helix 68	AH5	J	242	255	Right-handed alpha
Helix 69	AH6	J	273	284	Right-handed alpha
Helix 70	AH7	J	294	306	Right-handed alpha
Helix 71	AH8	J	315	324	Right-handed alpha
Helix 72	AH9	J	335	339	Right-handed 310
Helix 73	AI1	J	344	348	Right-handed 310
Helix 74	AI2	J	349	354	Right-handed alpha
Helix 75	AI3	J	355	357	Right-handed 310
Helix 76	AI4	J	358	362	Right-handed 310
Helix 77	AI5	J	365	369	Right-handed 310
Helix 78	AI6	K	76	81	Right-handed 310
Helix 79	AI7	K	84	94	Right-handed alpha
Helix 80	AI8	K	95	97	Right-handed 310
Helix 81	AI9	L	61	65	Right-handed 310
Helix 82	AJ1	L	69	74	Right-handed alpha
Helix 83	AJ2	L	130	141	Right-handed alpha
Helix 84	AJ3	L	160	165	Right-handed 310
Helix 85	AJ4	M	48	56	Right-handed alpha
Helix 86	AJ5	M	106	123	Right-handed alpha
Helix 87	AJ6	M	127	131	Right-handed 310
Helix 88	AJ7	M	137	147	Right-handed alpha
Helix 89	AJ8	M	173	176	Right-handed 310
Helix 90	AJ9	M	180	189	Right-handed alpha
Helix 91	AK1	M	200	204	Right-handed 310
Helix 92	AK2	M	220	226	Right-handed alpha
Helix 93	AK3	M	287	293	Right-handed alpha
Helix 94	AK4	M	294	299	Right-handed 310
Helix 95	AK5	M	318	333	Right-handed alpha
Helix 96	AK6	M	334	336	Right-handed 310
Helix 97	AK7	M	347	361	Right-handed alpha
Helix 98	AK8	M	381	386	Right-handed 310
Helix 99	AK9	M	389	394	Right-handed alpha
Helix 100	AL1	M	406	411	Right-handed alpha
Helix 101	AL2	M	411	425	Right-handed alpha
Helix 102	AL3	M	449	457	Right-handed alpha
Helix 103	AL4	M	460	468	Right-handed alpha
Helix 104	AL5	M	479	483	Right-handed 310
Helix 105	AL6	M	485	504	Right-handed alpha
Helix 106	AL7	M	521	529	Right-handed alpha
Helix 107	AL8	M	534	540	Right-handed alpha
Helix 108	AL9	M	588	592	Right-handed 310
Helix 109	AM1	M	618	631	Right-handed alpha
Helix 110	AM2	M	638	650	Right-handed alpha
Helix 111	AM3	M	651	655	Right-handed 310
Helix 112	AM4	M	664	673	Right-handed alpha
Helix 113	AM5	M	690	694	Right-handed 310
Helix 114	AM6	M	698	703	Right-handed alpha
Helix 115	AM7	M	704	716	Right-handed alpha
Helix 116	AM8	N	3	16	Right-handed alpha
Helix 117	AM9	N	19	31	Right-handed alpha
Helix 118	AN1	N	78	82	Right-handed 310
Helix 119	AN2	N	83	91	Right-handed alpha
Helix 120	AN3	O	56	68	Right-handed alpha
Helix 121	AN4	O	75	77	Right-handed 310
Helix 122	AN5	O	78	91	Right-handed alpha
Helix 123	AN6	O	94	106	Right-handed alpha
Helix 124	AN7	O	108	119	Right-handed alpha
Helix 125	AN8	O	137	143	Right-handed alpha
Helix 126	AN9	O	144	157	Right-handed alpha
Helix 127	AO1	O	197	210	Right-handed alpha
Helix 128	AO2	P	51	69	Right-handed alpha
Helix 129	AO3	P	92	103	Right-handed alpha
Helix 130	AO4	P	162	175	Right-handed alpha
Helix 131	AO5	P	242	246	Right-handed 310
Helix 132	AO6	Q	119	126	Right-handed alpha
Helix 133	AO7	Q	128	140	Right-handed alpha
Helix 134	AO8	Q	143	160	Right-handed alpha
Helix 135	AO9	Q	164	195	Right-handed alpha
Helix 136	AP1	Q	197	219	Right-handed alpha
Helix 137	AP2	Q	239	263	Right-handed alpha
Helix 138	AP3	Q	265	273	Right-handed alpha
Helix 139	AP4	Q	279	286	Right-handed alpha
Helix 140	AP5	Q	290	295	Right-handed alpha
Helix 141	AP6	Q	301	306	Right-handed alpha
Helix 142	AP7	Q	310	314	Right-handed 310
Helix 143	AP8	Q	325	350	Right-handed alpha
Helix 144	AP9	Q	367	372	Right-handed alpha
Helix 145	AQ1	Q	374	387	Right-handed alpha
Helix 146	AQ2	Q	426	434	Right-handed alpha
Helix 147	AQ3	Q	434	439	Right-handed alpha
Helix 148	AQ4	Q	443	454	Right-handed alpha
Helix 149	AQ5	Q	457	463	Right-handed alpha
Helix 150	AQ6	T	49	56	Right-handed 310
Helix 151	AQ7	T	66	73	Right-handed alpha
Helix 152	AQ8	T	90	94	Right-handed 310

There are 31 sheets in PDB entry 7VYN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	183	186	first strand
Strand 2	A	191	199	anti-parallel
Strand 3	A	153	158	parallel
Strand 4	A	112	117	parallel
Strand 5	A	240	244	parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	286	291	first strand
Strand 2	A	273	280	anti-parallel
Strand 3	A	353	358	parallel
Strand 4	A	314	318	anti-parallel
Strand 5	A	327	328	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	38	40	first strand
Strand 2	Q	318	320	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	101	103	first strand
Strand 2	B	167	169	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	128	134	first strand
Strand 2	B	140	148	anti-parallel
Strand 3	B	184	185	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	102	106	first strand
Strand 2	C	129	133	parallel
Strand 3	C	161	163	parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	53	56	first strand
Strand 2	F	16	22	parallel
Strand 3	F	64	69	anti-parallel
Strand 4	F	74	77	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	67	71	first strand
Strand 2	P	73	78	anti-parallel
Strand 3	P	84	88	anti-parallel
Strand 4	P	139	147	parallel
Strand 5	P	126	134	anti-parallel
Strand 6	P	110	118	anti-parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	103	107	first strand
Strand 2	J	79	84	parallel
Strand 3	J	55	59	parallel
Strand 4	J	125	128	parallel
Strand 5	J	163	167	parallel
Strand 6	J	199	203	parallel
Strand 7	J	262	265	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	206	207	first strand
Strand 2	J	240	241	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	226	228	first strand
Strand 2	J	290	292	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	236	237	first strand
Strand 2	J	271	272	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	125	128	first strand
Strand 2	L	97	101	anti-parallel
Strand 3	L	76	80	anti-parallel
Strand 4	L	144	147	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	106	108	first strand
Strand 2	L	115	117	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	39	43	first strand
Strand 2	M	32	36	anti-parallel
Strand 3	M	101	103	parallel
Strand 4	M	79	82	anti-parallel
Strand 5	M	89	90	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	169	171	first strand
Strand 2	M	231	233	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	196	198	first strand
Strand 2	M	205	207	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	246	251	first strand
Strand 2	M	260	266	anti-parallel
Strand 3	M	269	275	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	306	308	first strand
Strand 2	M	314	316	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	366	368	first strand
Strand 2	M	338	342	parallel
Strand 3	M	544	548	parallel
Strand 4	M	565	570	parallel
Strand 5	M	582	585	parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	443	446	first strand
Strand 2	M	428	432	parallel
Strand 3	M	399	403	parallel
Strand 4	M	472	477	parallel
Strand 5	M	513	516	parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	595	597	first strand
Strand 2	M	603	605	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	37	41	first strand
Strand 2	N	47	50	anti-parallel
Strand 3	N	60	63	anti-parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	169	174	first strand
Strand 2	O	130	135	parallel
Strand 3	O	186	188	anti-parallel
Strand 4	O	191	194	anti-parallel
Strand 5	O	217	218	parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	153	154	first strand
Strand 2	P	178	179	parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	208	213	first strand
Strand 2	P	218	223	anti-parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	80	84	first strand
Strand 2	Q	96	102	anti-parallel
Strand 3	Q	105	112	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	227	228	first strand
Strand 2	Q	231	232	anti-parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	394	402	first strand
Strand 2	Q	405	413	anti-parallel
Strand 3	Q	421	425	anti-parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	77	78	first strand
Strand 2	T	117	119	parallel
Strand 3	T	109	110	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	83	86	first strand
Strand 2	T	98	101	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7VYN

Analysis of interatomic Contacts of Structural Units in PDB entry:
7VYN