Analysis of interatomic Contacts of Structural Units in PDB entry:
7VYO

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7VYO entry

There are 2 chains in PDB entry 7VYO (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	LEU 674
B	MET 1	LEU 674

There are 58 helices in PDB entry 7VYO. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	45	50	Right-handed alpha
Helix 2	AA2	A	58	70	Right-handed alpha
Helix 3	AA3	A	72	76	Right-handed 310
Helix 4	AA4	A	84	99	Right-handed alpha
Helix 5	AA5	A	106	120	Right-handed alpha
Helix 6	AA6	A	124	126	Right-handed 310
Helix 7	AA7	A	132	144	Right-handed alpha
Helix 8	AA8	A	185	195	Right-handed alpha
Helix 9	AA9	A	196	198	Right-handed 310
Helix 10	AB1	A	203	211	Right-handed alpha
Helix 11	AB2	A	212	214	Right-handed 310
Helix 12	AB3	A	216	224	Right-handed alpha
Helix 13	AB4	A	247	254	Right-handed alpha
Helix 14	AB5	A	266	296	Right-handed alpha
Helix 15	AB6	A	304	308	Right-handed 310
Helix 16	AB7	A	309	319	Right-handed alpha
Helix 17	AB8	A	332	349	Right-handed alpha
Helix 18	AB9	A	369	380	Right-handed alpha
Helix 19	AC1	A	391	402	Right-handed alpha
Helix 20	AC2	A	431	441	Right-handed alpha
Helix 21	AC3	A	459	464	Right-handed alpha
Helix 22	AC4	A	483	487	Right-handed 310
Helix 23	AC5	A	510	525	Right-handed alpha
Helix 24	AC6	A	544	555	Right-handed alpha
Helix 25	AC7	A	574	578	Right-handed 310
Helix 26	AC8	A	595	599	Right-handed 310
Helix 27	AC9	A	620	629	Right-handed alpha
Helix 28	AD1	A	635	642	Right-handed alpha
Helix 29	AD2	A	647	660	Right-handed alpha
Helix 30	AD3	B	45	50	Right-handed alpha
Helix 31	AD4	B	58	70	Right-handed alpha
Helix 32	AD5	B	72	76	Right-handed 310
Helix 33	AD6	B	84	99	Right-handed alpha
Helix 34	AD7	B	106	120	Right-handed alpha
Helix 35	AD8	B	124	126	Right-handed 310
Helix 36	AD9	B	132	144	Right-handed alpha
Helix 37	AE1	B	185	196	Right-handed alpha
Helix 38	AE2	B	203	211	Right-handed alpha
Helix 39	AE3	B	212	214	Right-handed 310
Helix 40	AE4	B	216	224	Right-handed alpha
Helix 41	AE5	B	247	254	Right-handed alpha
Helix 42	AE6	B	266	296	Right-handed alpha
Helix 43	AE7	B	304	308	Right-handed 310
Helix 44	AE8	B	309	318	Right-handed alpha
Helix 45	AE9	B	332	348	Right-handed alpha
Helix 46	AF1	B	369	380	Right-handed alpha
Helix 47	AF2	B	391	402	Right-handed alpha
Helix 48	AF3	B	433	442	Right-handed alpha
Helix 49	AF4	B	459	464	Right-handed alpha
Helix 50	AF5	B	483	487	Right-handed 310
Helix 51	AF6	B	510	525	Right-handed alpha
Helix 52	AF7	B	544	555	Right-handed alpha
Helix 53	AF8	B	574	578	Right-handed 310
Helix 54	AF9	B	596	598	Right-handed 310
Helix 55	AG1	B	620	629	Right-handed alpha
Helix 56	AG2	B	635	641	Right-handed alpha
Helix 57	AG3	B	642	644	Right-handed 310
Helix 58	AG4	B	647	660	Right-handed alpha

There are 13 sheets in PDB entry 7VYO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	38	44	first strand
Strand 2	A	30	35	anti-parallel
Strand 3	A	2	7	anti-parallel
Strand 4	A	78	81	parallel
Strand 5	A	128	130	parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	173	181	first strand
Strand 2	A	162	170	anti-parallel
Strand 3	A	149	155	anti-parallel
Strand 4	A	299	303	parallel
Strand 5	A	324	326	parallel
Strand 6	A	470	471	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	227	230	first strand
Strand 2	A	234	237	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	384	387	first strand
Strand 2	A	565	569	anti-parallel
Strand 3	A	559	562	anti-parallel
Strand 4	A	406	409	parallel
Strand 5	A	423	428	anti-parallel
Strand 6	A	528	533	anti-parallel
Strand 7	A	453	456	anti-parallel
Strand 8	A	503	505	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	479	481	first strand
Strand 2	A	499	501	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	579	582	first strand
Strand 2	A	663	666	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	616	618	first strand
Strand 2	A	604	609	anti-parallel
Strand 3	A	586	592	anti-parallel
Strand 4	B	586	594	anti-parallel
Strand 5	B	600	609	anti-parallel
Strand 6	B	616	619	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	38	44	first strand
Strand 2	B	30	35	anti-parallel
Strand 3	B	2	7	anti-parallel
Strand 4	B	78	81	parallel
Strand 5	B	128	130	parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	173	181	first strand
Strand 2	B	162	170	anti-parallel
Strand 3	B	149	155	anti-parallel
Strand 4	B	299	303	parallel
Strand 5	B	324	326	parallel
Strand 6	B	470	471	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	227	230	first strand
Strand 2	B	234	237	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	384	387	first strand
Strand 2	B	565	569	anti-parallel
Strand 3	B	559	562	anti-parallel
Strand 4	B	406	409	parallel
Strand 5	B	423	428	anti-parallel
Strand 6	B	528	533	anti-parallel
Strand 7	B	453	456	anti-parallel
Strand 8	B	503	505	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	479	481	first strand
Strand 2	B	499	501	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	579	582	first strand
Strand 2	B	663	666	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7VYO

Analysis of interatomic Contacts of Structural Units in PDB entry:
7VYO