Analysis of interatomic Contacts of Structural Units in PDB entry:
7VYQ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7VYQ entry

There are 4 chains in PDB entry 7VYQ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 0	PRO 279
B	SER 0	PRO 279
F	SER 0	PRO 279
G	SER 0	PRO 279

There are 60 helices in PDB entry 7VYQ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	9	13	Right-handed 310
Helix 2	AA2	A	25	29	Right-handed 310
Helix 3	AA3	A	45	57	Right-handed alpha
Helix 4	AA4	A	71	81	Right-handed alpha
Helix 5	AA5	A	94	104	Right-handed alpha
Helix 6	AA6	A	104	109	Right-handed alpha
Helix 7	AA7	A	127	131	Right-handed 310
Helix 8	AA8	A	135	144	Right-handed alpha
Helix 9	AA9	A	145	163	Right-handed alpha
Helix 10	AB1	A	172	176	Right-handed 310
Helix 11	AB2	A	184	205	Right-handed alpha
Helix 12	AB3	A	228	238	Right-handed alpha
Helix 13	AB4	A	246	249	Right-handed 310
Helix 14	AB5	A	250	259	Right-handed alpha
Helix 15	AB6	A	260	263	Right-handed 310
Helix 16	AB7	B	9	13	Right-handed 310
Helix 17	AB8	B	25	29	Right-handed 310
Helix 18	AB9	B	45	57	Right-handed alpha
Helix 19	AC1	B	71	81	Right-handed alpha
Helix 20	AC2	B	94	104	Right-handed alpha
Helix 21	AC3	B	104	109	Right-handed alpha
Helix 22	AC4	B	127	131	Right-handed 310
Helix 23	AC5	B	135	144	Right-handed alpha
Helix 24	AC6	B	145	163	Right-handed alpha
Helix 25	AC7	B	172	176	Right-handed 310
Helix 26	AC8	B	184	206	Right-handed alpha
Helix 27	AC9	B	228	238	Right-handed alpha
Helix 28	AD1	B	246	249	Right-handed 310
Helix 29	AD2	B	250	257	Right-handed alpha
Helix 30	AD3	B	259	263	Right-handed 310
Helix 31	AD4	F	9	12	Right-handed 310
Helix 32	AD5	F	25	29	Right-handed 310
Helix 33	AD6	F	45	57	Right-handed alpha
Helix 34	AD7	F	71	81	Right-handed alpha
Helix 35	AD8	F	94	104	Right-handed alpha
Helix 36	AD9	F	104	109	Right-handed alpha
Helix 37	AE1	F	127	131	Right-handed 310
Helix 38	AE2	F	135	144	Right-handed alpha
Helix 39	AE3	F	145	163	Right-handed alpha
Helix 40	AE4	F	172	176	Right-handed 310
Helix 41	AE5	F	184	205	Right-handed alpha
Helix 42	AE6	F	228	238	Right-handed alpha
Helix 43	AE7	F	246	249	Right-handed 310
Helix 44	AE8	F	250	257	Right-handed alpha
Helix 45	AE9	F	259	263	Right-handed 310
Helix 46	AF1	G	9	13	Right-handed 310
Helix 47	AF2	G	25	29	Right-handed 310
Helix 48	AF3	G	45	57	Right-handed alpha
Helix 49	AF4	G	71	81	Right-handed alpha
Helix 50	AF5	G	94	104	Right-handed alpha
Helix 51	AF6	G	104	109	Right-handed alpha
Helix 52	AF7	G	127	131	Right-handed 310
Helix 53	AF8	G	135	144	Right-handed alpha
Helix 54	AF9	G	145	163	Right-handed alpha
Helix 55	AG1	G	172	176	Right-handed 310
Helix 56	AG2	G	184	206	Right-handed alpha
Helix 57	AG3	G	228	238	Right-handed alpha
Helix 58	AG4	G	246	249	Right-handed 310
Helix 59	AG5	G	250	259	Right-handed alpha
Helix 60	AG6	G	260	263	Right-handed 310

There are 9 sheets in PDB entry 7VYQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	86	89	first strand
Strand 2	A	59	65	parallel
Strand 3	A	35	39	parallel
Strand 4	A	114	116	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	167	169	first strand
Strand 2	A	211	213	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	86	89	first strand
Strand 2	B	59	65	parallel
Strand 3	B	35	39	parallel
Strand 4	B	114	116	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	167	169	first strand
Strand 2	B	211	213	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	4	5	first strand
Strand 2	F	14	15	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	86	89	first strand
Strand 2	F	59	65	parallel
Strand 3	F	35	39	parallel
Strand 4	F	114	116	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	167	169	first strand
Strand 2	F	211	213	parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	86	89	first strand
Strand 2	G	59	65	parallel
Strand 3	G	35	39	parallel
Strand 4	G	114	116	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	167	169	first strand
Strand 2	G	211	213	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7VYQ

Analysis of interatomic Contacts of Structural Units in PDB entry:
7VYQ