Analysis of interatomic Contacts of Structural Units in PDB entry:
7VYS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7VYS entry

There are 29 chains in PDB entry 7VYS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
Q
 ALA 34VAL 77
S
 MET 1ASP 70
U
 ALA 2LEU 84
V
 ALA 2VAL 141
W
 GLY 32THR 144
X
 SER 69GLU 156
Y
 VAL 38GLU 104
Z
 SER 12GLN 91
a
 LYS 52ASN 189
b
 SER 2HIS 127
c
 HIS 31ILE 186
d
 PRO 2ALA 176
e
 PRO 51ASP 154
f
 LYS 28GLU 76
g
 MET 1ARG 122
h
 PRO 2PRO 106
i
 MET 1ASN 347
j
 MET 1GLU 115
k
 MET 1CYS 98
l
 MET 1GLU 606
m
 MET 1ASN 175
n
 ASN 3LYS 58
o
 SER 2TYR 129
p
 ALA 2MET 179
r
 MET 1LEU 458
s
 MET 1SER 318
u
 PRO 2MET 172
v
 GLY 2GLY 125
w
 LEU 36LYS 355
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are222 helices in PDB entry 7VYS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
Q
40 45Right-handed alpha
Helix 2
AA2
Q
46 48Right-handed 310
Helix 3
AA3
Q
57 61Right-handed 310
Helix 4
AA4
S
1 4Right-handed 310
Helix 5
AA5
S
5 30Right-handed alpha
Helix 6
AA6
S
41 56Right-handed alpha
Helix 7
AA7
S
65 69Right-handed 310
Helix 8
AA8
U
3 16Right-handed alpha
Helix 9
AA9
U
16 32Right-handed alpha
Helix 10
AB1
U
33 36Right-handed 310
Helix 11
AB2
U
38 48Right-handed alpha
Helix 12
AB3
U
78 83Right-handed alpha
Helix 13
AB4
V
3 12Right-handed alpha
Helix 14
AB5
V
17 44Right-handed alpha
Helix 15
AB6
V
48 82Right-handed alpha
Helix 16
AB7
V
86 106Right-handed alpha
Helix 17
AB8
V
107 132Right-handed alpha
Helix 18
AB9
W
33 98Right-handed alpha
Helix 19
AC1
W
129 143Right-handed alpha
Helix 20
AC2
X
75 89Right-handed alpha
Helix 21
AC3
X
111 127Right-handed alpha
Helix 22
AC4
X
131 136Right-handed alpha
Helix 23
AC5
X
140 152Right-handed alpha
Helix 24
AC6
Y
51 76Right-handed alpha
Helix 25
AC7
Y
77 82Right-handed alpha
Helix 26
AC8
Y
88 92Right-handed 310
Helix 27
AC9
Y
93 98Right-handed alpha
Helix 28
AD1
Z
18 22Right-handed 310
Helix 29
AD2
Z
27 38Right-handed alpha
Helix 30
AD3
Z
45 50Right-handed alpha
Helix 31
AD4
Z
50 55Right-handed alpha
Helix 32
AD5
Z
62 68Right-handed alpha
Helix 33
AD6
Z
70 87Right-handed alpha
Helix 34
AD7
a
61 93Right-handed alpha
Helix 35
AD8
a
108 113Right-handed 310
Helix 36
AD9
a
115 126Right-handed alpha
Helix 37
AE1
a
128 164Right-handed alpha
Helix 38
AE2
a
175 179Right-handed 310
Helix 39
AE3
b
5 26Right-handed alpha
Helix 40
AE4
b
69 74Right-handed alpha
Helix 41
AE5
b
75 89Right-handed alpha
Helix 42
AE6
b
90 93Right-handed 310
Helix 43
AE7
c
44 55Right-handed alpha
Helix 44
AE8
c
82 86Right-handed 310
Helix 45
AE9
c
108 112Right-handed 310
Helix 46
AF1
c
128 150Right-handed alpha
Helix 47
AF2
d
28 58Right-handed alpha
Helix 48
AF3
d
73 77Right-handed 310
Helix 49
AF4
d
81 118Right-handed alpha
Helix 50
AF5
d
120 125Right-handed alpha
Helix 51
AF6
d
125 144Right-handed alpha
Helix 52
AF7
d
151 175Right-handed alpha
Helix 53
AF8
e
65 70Right-handed alpha
Helix 54
AF9
e
79 95Right-handed alpha
Helix 55
AG1
e
97 108Right-handed alpha
Helix 56
AG2
e
114 133Right-handed alpha
Helix 57
AG3
e
143 147Right-handed 310
Helix 58
AG4
f
40 74Right-handed alpha
Helix 59
AG5
g
17 23Right-handed 310
Helix 60
AG6
g
30 51Right-handed alpha
Helix 61
AG7
g
59 99Right-handed alpha
Helix 62
AG8
g
100 103Right-handed 310
Helix 63
AG9
h
5 11Right-handed alpha
Helix 64
AH1
h
15 19Right-handed 310
Helix 65
AH2
h
25 29Right-handed 310
Helix 66
AH3
h
33 45Right-handed alpha
Helix 67
AH4
h
48 56Right-handed alpha
Helix 68
AH5
h
56 69Right-handed alpha
Helix 69
AH6
h
69 90Right-handed alpha
Helix 70
AH7
i
2 23Right-handed alpha
Helix 71
AH8
i
25 45Right-handed alpha
Helix 72
AH9
i
49 81Right-handed alpha
Helix 73
AI1
i
91 107Right-handed alpha
Helix 74
AI2
i
113 122Right-handed alpha
Helix 75
AI3
i
123 133Right-handed alpha
Helix 76
AI4
i
135 145Right-handed alpha
Helix 77
AI5
i
146 149Right-handed 310
Helix 78
AI6
i
150 170Right-handed alpha
Helix 79
AI7
i
174 193Right-handed alpha
Helix 80
AI8
i
197 222Right-handed alpha
Helix 81
AI9
i
226 231Right-handed alpha
Helix 82
AJ1
i
232 236Right-handed 310
Helix 83
AJ2
i
237 252Right-handed alpha
Helix 84
AJ3
i
259 273Right-handed alpha
Helix 85
AJ4
i
276 301Right-handed alpha
Helix 86
AJ5
i
310 315Right-handed alpha
Helix 87
AJ6
i
325 335Right-handed alpha
Helix 88
AJ7
i
336 347Right-handed 310
Helix 89
AJ8
j
2 24Right-handed alpha
Helix 90
AJ9
j
55 73Right-handed alpha
Helix 91
AK1
j
74 79Right-handed alpha
Helix 92
AK2
j
83 108Right-handed alpha
Helix 93
AK3
k
2 21Right-handed alpha
Helix 94
AK4
k
25 52Right-handed alpha
Helix 95
AK5
k
54 57Right-handed 310
Helix 96
AK6
k
58 86Right-handed alpha
Helix 97
AK7
k
89 93Right-handed 310
Helix 98
AK8
l
3 14Right-handed alpha
Helix 99
AK9
l
16 22Right-handed alpha
Helix 100
AL1
l
31 58Right-handed alpha
Helix 101
AL2
l
83 108Right-handed alpha
Helix 102
AL3
l
113 134Right-handed alpha
Helix 103
AL4
l
136 156Right-handed alpha
Helix 104
AL5
l
161 194Right-handed alpha
Helix 105
AL6
l
197 205Right-handed alpha
Helix 106
AL7
l
209 224Right-handed alpha
Helix 107
AL8
l
226 230Right-handed 310
Helix 108
AL9
l
231 236Right-handed alpha
Helix 109
AM1
l
237 239Right-handed 310
Helix 110
AM2
l
240 247Right-handed alpha
Helix 111
AM3
l
254 263Right-handed alpha
Helix 112
AM4
l
263 268Right-handed alpha
Helix 113
AM5
l
270 293Right-handed alpha
Helix 114
AM6
l
297 319Right-handed alpha
Helix 115
AM7
l
321 350Right-handed alpha
Helix 116
AM8
l
355 359Right-handed 310
Helix 117
AM9
l
366 381Right-handed alpha
Helix 118
AN1
l
388 401Right-handed alpha
Helix 119
AN2
l
405 432Right-handed alpha
Helix 120
AN3
l
447 470Right-handed alpha
Helix 121
AN4
l
483 488Right-handed alpha
Helix 122
AN5
l
488 507Right-handed alpha
Helix 123
AN6
l
508 510Right-handed 310
Helix 124
AN7
l
517 525Right-handed alpha
Helix 125
AN8
l
528 534Right-handed alpha
Helix 126
AN9
l
535 548Right-handed alpha
Helix 127
AO1
l
556 562Right-handed alpha
Helix 128
AO2
l
562 579Right-handed alpha
Helix 129
AO3
l
583 601Right-handed alpha
Helix 130
AO4
m
4 22Right-handed alpha
Helix 131
AO5
m
25 46Right-handed alpha
Helix 132
AO6
m
49 75Right-handed alpha
Helix 133
AO7
m
86 110Right-handed alpha
Helix 134
AO8
m
137 145Right-handed alpha
Helix 135
AO9
m
150 174Right-handed alpha
Helix 136
AP1
n
4 12Right-handed alpha
Helix 137
AP2
n
15 33Right-handed alpha
Helix 138
AP3
o
15 23Right-handed 310
Helix 139
AP4
o
26 52Right-handed alpha
Helix 140
AP5
o
62 74Right-handed alpha
Helix 141
AP6
o
76 80Right-handed 310
Helix 142
AP7
o
83 118Right-handed alpha
Helix 143
AP8
p
11 31Right-handed alpha
Helix 144
AP9
p
33 51Right-handed alpha
Helix 145
AQ1
p
56 75Right-handed alpha
Helix 146
AQ2
p
100 107Right-handed 310
Helix 147
AQ3
p
108 114Right-handed alpha
Helix 148
AQ4
p
115 144Right-handed alpha
Helix 149
AQ5
p
167 172Right-handed alpha
Helix 150
AQ6
r
2 17Right-handed alpha
Helix 151
AQ7
r
22 39Right-handed alpha
Helix 152
AQ8
r
40 43Right-handed 310
Helix 153
AQ9
r
61 81Right-handed alpha
Helix 154
AR1
r
88 112Right-handed alpha
Helix 155
AR2
r
114 125Right-handed alpha
Helix 156
AR3
r
125 137Right-handed alpha
Helix 157
AR4
r
141 172Right-handed alpha
Helix 158
AR5
r
175 182Right-handed alpha
Helix 159
AR6
r
189 207Right-handed alpha
Helix 160
AR7
r
214 223Right-handed alpha
Helix 161
AR8
r
224 234Right-handed alpha
Helix 162
AR9
r
236 247Right-handed alpha
Helix 163
AS1
r
248 250Right-handed 310
Helix 164
AS2
r
253 258Right-handed alpha
Helix 165
AS3
r
258 278Right-handed alpha
Helix 166
AS4
r
281 304Right-handed alpha
Helix 167
AS5
r
305 338Right-handed alpha
Helix 168
AS6
r
347 352Right-handed alpha
Helix 169
AS7
r
352 367Right-handed alpha
Helix 170
AS8
r
372 389Right-handed alpha
Helix 171
AS9
r
391 415Right-handed alpha
Helix 172
AT1
r
430 450Right-handed alpha
Helix 173
AT2
r
451 455Right-handed 310
Helix 174
AT3
s
2 32Right-handed alpha
Helix 175
AT4
s
41 45Right-handed 310
Helix 176
AT5
s
46 57Right-handed alpha
Helix 177
AT6
s
67 85Right-handed alpha
Helix 178
AT7
s
100 112Right-handed alpha
Helix 179
AT8
s
112 124Right-handed alpha
Helix 180
AT9
s
125 155Right-handed alpha
Helix 181
AU1
s
163 169Right-handed alpha
Helix 182
AU2
s
173 177Right-handed 310
Helix 183
AU3
s
178 193Right-handed alpha
Helix 184
AU4
s
203 208Right-handed alpha
Helix 185
AU5
s
209 213Right-handed 310
Helix 186
AU6
s
216 243Right-handed alpha
Helix 187
AU7
s
251 277Right-handed alpha
Helix 188
AU8
s
281 292Right-handed alpha
Helix 189
AU9
s
292 311Right-handed alpha
Helix 190
AV1
u
10 14Right-handed 310
Helix 191
AV2
u
21 28Right-handed alpha
Helix 192
AV3
u
28 36Right-handed alpha
Helix 193
AV4
u
36 51Right-handed alpha
Helix 194
AV5
u
52 55Right-handed 310
Helix 195
AV6
u
56 92Right-handed alpha
Helix 196
AV7
u
101 116Right-handed alpha
Helix 197
AV8
v
3 10Right-handed alpha
Helix 198
AV9
v
12 16Right-handed 310
Helix 199
AW1
v
42 50Right-handed alpha
Helix 200
AW2
v
59 73Right-handed alpha
Helix 201
AW3
v
81 124Right-handed alpha
Helix 202
AW4
w
39 45Right-handed alpha
Helix 203
AW5
w
49 53Right-handed 310
Helix 204
AW6
w
69 82Right-handed alpha
Helix 205
AW7
w
94 98Right-handed 310
Helix 206
AW8
w
113 120Right-handed alpha
Helix 207
AW9
w
126 154Right-handed alpha
Helix 208
AX1
w
166 176Right-handed alpha
Helix 209
AX2
w
180 195Right-handed alpha
Helix 210
AX3
w
196 198Right-handed 310
Helix 211
AX4
w
210 222Right-handed alpha
Helix 212
AX5
w
225 229Right-handed 310
Helix 213
AX6
w
230 253Right-handed alpha
Helix 214
AX7
w
261 264Right-handed 310
Helix 215
AX8
w
265 274Right-handed alpha
Helix 216
AX9
w
282 286Right-handed 310
Helix 217
AY1
w
287 299Right-handed alpha
Helix 218
AY2
w
300 306Right-handed alpha
Helix 219
AY3
w
307 310Right-handed 310
Helix 220
AY4
w
320 333Right-handed alpha
Helix 221
AY5
w
340 348Right-handed 310
Helix 222
AY6
w
351 355Right-handed 310
Back to top of page

There are 5 sheets in PDB entry 7VYS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
U
57 58first strand
Strand 2
u
130 131parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
a
97 98first strand
Strand 2
d
62 63parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
b
97 99first strand
Strand 2
l
61 70anti-parallel
Strand 3
l
75 81anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
i
307 308first strand
Strand 2
w
318 319anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
w
84 86first strand
Strand 2
w
157 159parallel
Strand 3
w
60 64parallel
Strand 4
w
203 208parallel
Strand 5
w
255 259parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il