Analysis of interatomic Contacts of Structural Units in PDB entry:
7VYU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7VYU entry

There are 2 chains in PDB entry 7VYU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 5PRO 342
B
 ASN 5PRO 342
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 34 helices in PDB entry 7VYU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
21 27Right-handed alpha
Helix 2
AA2
A
31 39Right-handed alpha
Helix 3
AA3
A
50 65Right-handed alpha
Helix 4
AA4
A
69 71Right-handed 310
Helix 5
AA5
A
90 98Right-handed alpha
Helix 6
AA6
A
111 113Right-handed 310
Helix 7
AA7
A
114 130Right-handed alpha
Helix 8
AA8
A
187 195Right-handed 310
Helix 9
AA9
A
202 207Right-handed 310
Helix 10
AB1
A
211 223Right-handed alpha
Helix 11
AB2
A
229 250Right-handed alpha
Helix 12
AB3
A
252 254Right-handed 310
Helix 13
AB4
A
265 273Right-handed alpha
Helix 14
AB5
A
273 278Right-handed alpha
Helix 15
AB6
A
280 284Right-handed 310
Helix 16
AB7
A
285 293Right-handed alpha
Helix 17
AB8
A
298 310Right-handed alpha
Helix 18
AB9
B
21 27Right-handed alpha
Helix 19
AC1
B
31 39Right-handed alpha
Helix 20
AC2
B
50 65Right-handed alpha
Helix 21
AC3
B
69 71Right-handed 310
Helix 22
AC4
B
90 98Right-handed alpha
Helix 23
AC5
B
111 113Right-handed 310
Helix 24
AC6
B
114 130Right-handed alpha
Helix 25
AC7
B
187 194Right-handed 310
Helix 26
AC8
B
202 207Right-handed 310
Helix 27
AC9
B
211 223Right-handed alpha
Helix 28
AD1
B
229 250Right-handed alpha
Helix 29
AD2
B
252 254Right-handed 310
Helix 30
AD3
B
265 273Right-handed alpha
Helix 31
AD4
B
273 278Right-handed alpha
Helix 32
AD5
B
280 284Right-handed 310
Helix 33
AD6
B
285 293Right-handed alpha
Helix 34
AD7
B
298 310Right-handed alpha
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There are 3 sheets in PDB entry 7VYU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 18 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
256 260first strand
Strand 2
A
318 325parallel
Strand 3
A
329 337anti-parallel
Strand 4
A
176 185anti-parallel
Strand 5
A
6 14anti-parallel
Strand 6
A
163 170anti-parallel
Strand 7
A
135 142anti-parallel
Strand 8
A
73 79parallel
Strand 9
A
106 110parallel
Strand 10
B
106 110anti-parallel
Strand 11
B
73 79parallel
Strand 12
B
135 142parallel
Strand 13
B
163 170anti-parallel
Strand 14
B
7 14anti-parallel
Strand 15
B
176 185anti-parallel
Strand 16
B
329 337anti-parallel
Strand 17
B
318 325anti-parallel
Strand 18
B
256 260parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
18 20first strand
Strand 2
A
42 44anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
18 20first strand
Strand 2
B
42 44anti-parallel
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