Analysis of interatomic Contacts of Structural Units in PDB entry:
7VYX

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7VYX entry

There are 8 chains in PDB entry 7VYX (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	HIS 7	ASN 1284
B	LEU 8	ASN 1284
C	G 1	A 127
D	G 2	U 126
E	T 5	C 26
F	G 1	C 26
G	G 1	A 11
H	G 1	A 11

There are 96 helices in PDB entry 7VYX. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	13	25	Right-handed alpha
Helix 2	AA2	A	27	41	Right-handed alpha
Helix 3	AA3	A	69	82	Right-handed alpha
Helix 4	AA4	A	87	98	Right-handed alpha
Helix 5	AA5	A	105	114	Right-handed alpha
Helix 6	AA6	A	119	132	Right-handed alpha
Helix 7	AA7	A	139	149	Right-handed alpha
Helix 8	AA8	A	152	156	Right-handed 310
Helix 9	AA9	A	159	171	Right-handed alpha
Helix 10	AB1	A	183	198	Right-handed alpha
Helix 11	AB2	A	200	207	Right-handed alpha
Helix 12	AB3	A	207	223	Right-handed alpha
Helix 13	AB4	A	227	239	Right-handed alpha
Helix 14	AB5	A	263	279	Right-handed alpha
Helix 15	AB6	A	284	292	Right-handed alpha
Helix 16	AB7	A	300	305	Right-handed alpha
Helix 17	AB8	A	307	315	Right-handed alpha
Helix 18	AB9	A	341	354	Right-handed alpha
Helix 19	AC1	A	373	401	Right-handed alpha
Helix 20	AC2	A	432	452	Right-handed alpha
Helix 21	AC3	A	461	487	Right-handed alpha
Helix 22	AC4	A	526	560	Right-handed alpha
Helix 23	AC5	A	566	577	Right-handed alpha
Helix 24	AC6	A	585	604	Right-handed alpha
Helix 25	AC7	A	608	621	Right-handed alpha
Helix 26	AC8	A	625	634	Right-handed alpha
Helix 27	AC9	A	662	681	Right-handed alpha
Helix 28	AD1	A	682	684	Right-handed 310
Helix 29	AD2	A	688	708	Right-handed alpha
Helix 30	AD3	A	731	735	Right-handed 310
Helix 31	AD4	A	747	753	Right-handed alpha
Helix 32	AD5	A	753	768	Right-handed alpha
Helix 33	AD6	A	798	803	Right-handed 310
Helix 34	AD7	A	804	813	Right-handed alpha
Helix 35	AD8	A	825	836	Right-handed alpha
Helix 36	AD9	A	839	842	Right-handed 310
Helix 37	AE1	A	843	848	Right-handed alpha
Helix 38	AE2	A	895	908	Right-handed alpha
Helix 39	AE3	A	1001	1011	Right-handed alpha
Helix 40	AE4	A	1029	1054	Right-handed alpha
Helix 41	AE5	A	1071	1081	Right-handed alpha
Helix 42	AE6	A	1089	1100	Right-handed alpha
Helix 43	AE7	A	1156	1166	Right-handed alpha
Helix 44	AE8	A	1197	1205	Right-handed alpha
Helix 45	AE9	A	1220	1232	Right-handed alpha
Helix 46	AF1	A	1257	1262	Right-handed alpha
Helix 47	AF2	A	1264	1281	Right-handed alpha
Helix 48	AF3	B	13	25	Right-handed alpha
Helix 49	AF4	B	27	41	Right-handed alpha
Helix 50	AF5	B	69	82	Right-handed alpha
Helix 51	AF6	B	87	98	Right-handed alpha
Helix 52	AF7	B	105	114	Right-handed alpha
Helix 53	AF8	B	119	132	Right-handed alpha
Helix 54	AF9	B	139	149	Right-handed alpha
Helix 55	AG1	B	152	157	Right-handed 310
Helix 56	AG2	B	159	171	Right-handed alpha
Helix 57	AG3	B	181	199	Right-handed alpha
Helix 58	AG4	B	200	207	Right-handed alpha
Helix 59	AG5	B	207	223	Right-handed alpha
Helix 60	AG6	B	227	238	Right-handed alpha
Helix 61	AG7	B	263	280	Right-handed alpha
Helix 62	AG8	B	284	292	Right-handed alpha
Helix 63	AG9	B	300	305	Right-handed alpha
Helix 64	AH1	B	307	315	Right-handed alpha
Helix 65	AH2	B	327	332	Right-handed alpha
Helix 66	AH3	B	337	340	Right-handed 310
Helix 67	AH4	B	341	354	Right-handed alpha
Helix 68	AH5	B	369	372	Right-handed 310
Helix 69	AH6	B	373	400	Right-handed alpha
Helix 70	AH7	B	432	453	Right-handed alpha
Helix 71	AH8	B	461	487	Right-handed alpha
Helix 72	AH9	B	526	559	Right-handed alpha
Helix 73	AI1	B	564	576	Right-handed alpha
Helix 74	AI2	B	582	604	Right-handed alpha
Helix 75	AI3	B	608	621	Right-handed alpha
Helix 76	AI4	B	625	634	Right-handed alpha
Helix 77	AI5	B	662	681	Right-handed alpha
Helix 78	AI6	B	682	684	Right-handed 310
Helix 79	AI7	B	688	708	Right-handed alpha
Helix 80	AI8	B	746	753	Right-handed alpha
Helix 81	AI9	B	753	767	Right-handed alpha
Helix 82	AJ1	B	798	802	Right-handed 310
Helix 83	AJ2	B	806	813	Right-handed alpha
Helix 84	AJ3	B	825	835	Right-handed alpha
Helix 85	AJ4	B	840	842	Right-handed 310
Helix 86	AJ5	B	843	850	Right-handed alpha
Helix 87	AJ6	B	895	908	Right-handed alpha
Helix 88	AJ7	B	1000	1010	Right-handed alpha
Helix 89	AJ8	B	1029	1054	Right-handed alpha
Helix 90	AJ9	B	1071	1085	Right-handed alpha
Helix 91	AK1	B	1089	1100	Right-handed alpha
Helix 92	AK2	B	1156	1165	Right-handed alpha
Helix 93	AK3	B	1197	1205	Right-handed alpha
Helix 94	AK4	B	1220	1232	Right-handed alpha
Helix 95	AK5	B	1257	1262	Right-handed alpha
Helix 96	AK6	B	1265	1281	Right-handed alpha

There are 13 sheets in PDB entry 7VYX. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	879	882	first strand
Strand 2	A	870	873	anti-parallel
Strand 3	A	785	789	anti-parallel
Strand 4	A	852	857	anti-parallel
Strand 5	A	889	893	anti-parallel
Strand 6	A	51	60	anti-parallel
Strand 7	A	933	951	anti-parallel
Strand 8	A	913	914	anti-parallel

Back to list of sheets
Back to top of page

There are 10 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	879	882	first strand
Strand 2	A	870	873	anti-parallel
Strand 3	A	785	789	anti-parallel
Strand 4	A	852	857	anti-parallel
Strand 5	A	889	893	anti-parallel
Strand 6	A	51	60	anti-parallel
Strand 7	A	933	951	anti-parallel
Strand 8	A	918	930	anti-parallel
Strand 9	A	770	777	anti-parallel
Strand 10	A	1021	1022	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	100	102	first strand
Strand 2	A	247	249	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	994	998	first strand
Strand 2	A	974	980	anti-parallel
Strand 3	A	964	971	anti-parallel
Strand 4	A	1055	1060	parallel
Strand 5	A	1138	1140	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1106	1118	first strand
Strand 2	A	1124	1134	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1190	1191	first strand
Strand 2	A	1212	1213	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1233	1234	first strand
Strand 2	A	1248	1249	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	879	881	first strand
Strand 2	B	871	873	anti-parallel
Strand 3	B	785	789	anti-parallel
Strand 4	B	852	857	anti-parallel
Strand 5	B	889	893	anti-parallel
Strand 6	B	50	60	anti-parallel
Strand 7	B	933	952	anti-parallel
Strand 8	B	912	914	anti-parallel

Back to list of sheets
Back to top of page

There are 10 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	879	881	first strand
Strand 2	B	871	873	anti-parallel
Strand 3	B	785	789	anti-parallel
Strand 4	B	852	857	anti-parallel
Strand 5	B	889	893	anti-parallel
Strand 6	B	50	60	anti-parallel
Strand 7	B	933	952	anti-parallel
Strand 8	B	918	930	anti-parallel
Strand 9	B	770	777	anti-parallel
Strand 10	B	1021	1022	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	100	102	first strand
Strand 2	B	247	249	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	992	997	first strand
Strand 2	B	976	980	anti-parallel
Strand 3	B	964	969	anti-parallel
Strand 4	B	1055	1060	parallel
Strand 5	B	1138	1140	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1106	1116	first strand
Strand 2	B	1127	1134	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1233	1234	first strand
Strand 2	B	1248	1249	anti-parallel
Strand 3	B	1263	1264	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7VYX

Analysis of interatomic Contacts of Structural Units in PDB entry:
7VYX