Analysis of interatomic Contacts of Structural Units in PDB entry:
7VYY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7VYY entry

There are 2 chains in PDB entry 7VYY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 2TRP 370
B
 MET 1TRP 370
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 37 helices in PDB entry 7VYY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
11 28Right-handed alpha
Helix 2
AA2
A
47 53Right-handed alpha
Helix 3
AA3
A
68 80Right-handed alpha
Helix 4
AA4
A
80 87Right-handed alpha
Helix 5
AA5
A
98 111Right-handed alpha
Helix 6
AA6
A
132 144Right-handed alpha
Helix 7
AA7
A
151 160Right-handed alpha
Helix 8
AA8
A
164 166Right-handed 310
Helix 9
AA9
A
174 183Right-handed alpha
Helix 10
AB1
A
192 199Right-handed alpha
Helix 11
AB2
A
210 214Right-handed 310
Helix 12
AB3
A
215 232Right-handed alpha
Helix 13
AB4
A
244 256Right-handed alpha
Helix 14
AB5
A
268 279Right-handed alpha
Helix 15
AB6
A
286 296Right-handed alpha
Helix 16
AB7
A
309 315Right-handed alpha
Helix 17
AB8
A
324 338Right-handed alpha
Helix 18
AB9
A
338 347Right-handed alpha
Helix 19
AC1
A
357 370Right-handed alpha
Helix 20
AC2
B
11 28Right-handed alpha
Helix 21
AC3
B
68 80Right-handed alpha
Helix 22
AC4
B
80 87Right-handed alpha
Helix 23
AC5
B
98 111Right-handed alpha
Helix 24
AC6
B
132 144Right-handed alpha
Helix 25
AC7
B
151 160Right-handed alpha
Helix 26
AC8
B
164 166Right-handed 310
Helix 27
AC9
B
174 181Right-handed alpha
Helix 28
AD1
B
193 199Right-handed alpha
Helix 29
AD2
B
210 214Right-handed 310
Helix 30
AD3
B
215 232Right-handed alpha
Helix 31
AD4
B
244 256Right-handed alpha
Helix 32
AD5
B
268 279Right-handed alpha
Helix 33
AD6
B
286 296Right-handed alpha
Helix 34
AD7
B
309 315Right-handed alpha
Helix 35
AD8
B
324 338Right-handed alpha
Helix 36
AD9
B
338 347Right-handed alpha
Helix 37
AE1
B
357 370Right-handed alpha
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There are 4 sheets in PDB entry 7VYY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
58 59first strand
Strand 2
A
31 37parallel
Strand 3
A
3 9parallel
Strand 4
A
91 95parallel
Strand 5
A
115 118parallel
Strand 6
A
146 149parallel
Strand 7
A
168 170parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
261 264first strand
Strand 2
A
235 240parallel
Strand 3
A
202 207parallel
Strand 4
A
281 284parallel
Strand 5
A
300 302parallel
Strand 6
A
318 320parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
56 59first strand
Strand 2
B
31 37parallel
Strand 3
B
3 9parallel
Strand 4
B
91 95parallel
Strand 5
B
115 118parallel
Strand 6
B
146 149parallel
Strand 7
B
168 170parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
261 264first strand
Strand 2
B
235 240parallel
Strand 3
B
202 207parallel
Strand 4
B
281 284parallel
Strand 5
B
300 302parallel
Strand 6
B
318 320parallel
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