Analysis of interatomic Contacts of Structural Units in PDB entry:
7VZ3

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7VZ3 entry

There are 3 chains in PDB entry 7VZ3 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 155	MET 905
B	ASP 152	MET 905
C	LYS 155	MET 905

There are 55 helices in PDB entry 7VZ3. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	155	182	Right-handed alpha
Helix 2	AA2	A	185	192	Right-handed alpha
Helix 3	AA3	A	195	200	Right-handed 310
Helix 4	AA4	A	205	211	Right-handed alpha
Helix 5	AA5	A	277	280	Right-handed 310
Helix 6	AA6	A	301	316	Right-handed alpha
Helix 7	AA7	A	354	357	Right-handed 310
Helix 8	AA8	A	473	479	Right-handed alpha
Helix 9	AA9	A	561	569	Right-handed alpha
Helix 10	AB1	A	643	646	Right-handed 310
Helix 11	AB2	A	653	659	Right-handed alpha
Helix 12	AB3	A	662	665	Right-handed 310
Helix 13	AB4	A	705	709	Right-handed 310
Helix 14	AB5	A	741	746	Right-handed alpha
Helix 15	AB6	A	784	788	Right-handed 310
Helix 16	AB7	A	823	827	Right-handed alpha
Helix 17	AB8	A	828	832	Right-handed 310
Helix 18	AB9	A	862	867	Right-handed alpha
Helix 19	AC1	A	886	902	Right-handed alpha
Helix 20	AC2	B	153	183	Right-handed alpha
Helix 21	AC3	B	186	193	Right-handed alpha
Helix 22	AC4	B	195	200	Right-handed 310
Helix 23	AC5	B	205	211	Right-handed alpha
Helix 24	AC6	B	277	280	Right-handed 310
Helix 25	AC7	B	301	316	Right-handed alpha
Helix 26	AC8	B	354	357	Right-handed 310
Helix 27	AC9	B	473	479	Right-handed alpha
Helix 28	AD1	B	561	569	Right-handed alpha
Helix 29	AD2	B	643	646	Right-handed 310
Helix 30	AD3	B	653	660	Right-handed alpha
Helix 31	AD4	B	662	665	Right-handed 310
Helix 32	AD5	B	705	709	Right-handed 310
Helix 33	AD6	B	741	746	Right-handed alpha
Helix 34	AD7	B	784	788	Right-handed 310
Helix 35	AD8	B	823	827	Right-handed alpha
Helix 36	AD9	B	862	867	Right-handed alpha
Helix 37	AE1	B	886	902	Right-handed alpha
Helix 38	AE2	C	156	181	Right-handed alpha
Helix 39	AE3	C	184	192	Right-handed alpha
Helix 40	AE4	C	195	200	Right-handed 310
Helix 41	AE5	C	205	211	Right-handed alpha
Helix 42	AE6	C	277	280	Right-handed 310
Helix 43	AE7	C	301	316	Right-handed alpha
Helix 44	AE8	C	473	479	Right-handed alpha
Helix 45	AE9	C	561	569	Right-handed alpha
Helix 46	AF1	C	643	646	Right-handed 310
Helix 47	AF2	C	653	659	Right-handed alpha
Helix 48	AF3	C	662	665	Right-handed 310
Helix 49	AF4	C	705	709	Right-handed 310
Helix 50	AF5	C	741	746	Right-handed alpha
Helix 51	AF6	C	784	788	Right-handed 310
Helix 52	AF7	C	823	827	Right-handed alpha
Helix 53	AF8	C	828	832	Right-handed 310
Helix 54	AF9	C	862	867	Right-handed alpha
Helix 55	AG1	C	885	902	Right-handed alpha

There are 24 sheets in PDB entry 7VZ3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	220	223	first strand
Strand 2	A	241	247	anti-parallel
Strand 3	A	263	267	anti-parallel
Strand 4	A	257	259	anti-parallel

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There are 10 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	273	275	first strand
Strand 2	A	318	320	parallel
Strand 3	A	341	343	parallel
Strand 4	A	375	382	parallel
Strand 5	A	404	411	parallel
Strand 6	A	434	436	parallel
Strand 7	A	466	468	parallel
Strand 8	A	516	518	parallel
Strand 9	A	543	548	parallel
Strand 10	A	593	597	parallel

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There are 11 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	324	328	first strand
Strand 2	A	348	352	parallel
Strand 3	A	375	382	parallel
Strand 4	A	404	411	parallel
Strand 5	A	428	431	parallel
Strand 6	A	460	463	parallel
Strand 7	A	508	513	parallel
Strand 8	A	535	540	parallel
Strand 9	A	587	588	parallel
Strand 10	A	612	613	parallel
Strand 11	A	640	641	parallel

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There are 10 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	334	336	first strand
Strand 2	A	364	368	parallel
Strand 3	A	389	393	parallel
Strand 4	A	415	419	parallel
Strand 5	A	441	446	parallel
Strand 6	A	499	505	parallel
Strand 7	A	525	532	parallel
Strand 8	A	576	581	parallel
Strand 9	A	600	605	parallel
Strand 10	A	626	628	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	480	482	first strand
Strand 2	A	488	490	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	795	801	first strand
Strand 2	A	749	757	anti-parallel
Strand 3	A	838	845	anti-parallel
Strand 4	A	667	674	anti-parallel
Strand 5	C	858	859	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	711	712	first strand
Strand 2	A	821	822	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	727	732	first strand
Strand 2	A	808	815	anti-parallel
Strand 3	A	764	771	anti-parallel
Strand 4	A	777	783	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	858	859	first strand
Strand 2	B	667	674	anti-parallel
Strand 3	B	838	845	anti-parallel
Strand 4	B	749	757	anti-parallel
Strand 5	B	795	801	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	220	225	first strand
Strand 2	B	239	247	anti-parallel
Strand 3	B	263	267	anti-parallel
Strand 4	B	257	260	anti-parallel

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There are 10 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	273	275	first strand
Strand 2	B	318	320	parallel
Strand 3	B	341	343	parallel
Strand 4	B	375	382	parallel
Strand 5	B	404	411	parallel
Strand 6	B	434	436	parallel
Strand 7	B	466	468	parallel
Strand 8	B	516	518	parallel
Strand 9	B	543	548	parallel
Strand 10	B	593	597	parallel

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There are 11 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	324	328	first strand
Strand 2	B	348	352	parallel
Strand 3	B	375	382	parallel
Strand 4	B	404	411	parallel
Strand 5	B	428	431	parallel
Strand 6	B	460	463	parallel
Strand 7	B	508	513	parallel
Strand 8	B	535	540	parallel
Strand 9	B	587	588	parallel
Strand 10	B	612	613	parallel
Strand 11	B	640	641	parallel

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There are 10 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	334	336	first strand
Strand 2	B	364	368	parallel
Strand 3	B	389	393	parallel
Strand 4	B	415	419	parallel
Strand 5	B	441	446	parallel
Strand 6	B	499	505	parallel
Strand 7	B	525	532	parallel
Strand 8	B	576	581	parallel
Strand 9	B	600	605	parallel
Strand 10	B	626	628	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	480	482	first strand
Strand 2	B	488	490	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	711	712	first strand
Strand 2	B	821	822	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	727	732	first strand
Strand 2	B	808	815	anti-parallel
Strand 3	B	764	771	anti-parallel
Strand 4	B	777	783	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	858	859	first strand
Strand 2	C	667	674	anti-parallel
Strand 3	C	838	845	anti-parallel
Strand 4	C	749	757	anti-parallel
Strand 5	C	795	801	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	220	225	first strand
Strand 2	C	239	247	anti-parallel
Strand 3	C	263	267	anti-parallel
Strand 4	C	257	259	anti-parallel

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There are 10 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	273	275	first strand
Strand 2	C	318	320	parallel
Strand 3	C	341	343	parallel
Strand 4	C	375	382	parallel
Strand 5	C	404	411	parallel
Strand 6	C	434	436	parallel
Strand 7	C	466	468	parallel
Strand 8	C	516	518	parallel
Strand 9	C	543	548	parallel
Strand 10	C	593	597	parallel

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There are 11 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	324	328	first strand
Strand 2	C	348	352	parallel
Strand 3	C	375	382	parallel
Strand 4	C	404	411	parallel
Strand 5	C	428	431	parallel
Strand 6	C	460	463	parallel
Strand 7	C	508	513	parallel
Strand 8	C	535	540	parallel
Strand 9	C	587	588	parallel
Strand 10	C	612	613	parallel
Strand 11	C	640	641	parallel

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There are 10 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	334	336	first strand
Strand 2	C	364	368	parallel
Strand 3	C	389	393	parallel
Strand 4	C	415	419	parallel
Strand 5	C	441	446	parallel
Strand 6	C	499	505	parallel
Strand 7	C	525	532	parallel
Strand 8	C	576	581	parallel
Strand 9	C	600	605	parallel
Strand 10	C	626	628	parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	480	482	first strand
Strand 2	C	488	490	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	711	712	first strand
Strand 2	C	821	822	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	727	732	first strand
Strand 2	C	808	815	anti-parallel
Strand 3	C	764	771	anti-parallel
Strand 4	C	777	783	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7VZ3

Analysis of interatomic Contacts of Structural Units in PDB entry:
7VZ3