Analysis of interatomic Contacts of Structural Units in PDB entry:
7VZB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7VZB entry

There are 2 chains in PDB entry 7VZB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 67ASP 685
B
 MET 67ASP 685
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 50 helices in PDB entry 7VZB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
70 80Right-handed alpha
Helix 2
AA2
A
88 108Right-handed alpha
Helix 3
AA3
A
110 124Right-handed alpha
Helix 4
AA4
A
127 140Right-handed alpha
Helix 5
AA5
A
140 175Right-handed alpha
Helix 6
AA6
A
178 183Right-handed alpha
Helix 7
AA7
A
192 200Right-handed alpha
Helix 8
AA8
A
200 217Right-handed alpha
Helix 9
AA9
A
217 236Right-handed alpha
Helix 10
AB1
A
240 261Right-handed alpha
Helix 11
AB2
A
264 289Right-handed alpha
Helix 12
AB3
A
289 296Right-handed alpha
Helix 13
AB4
A
300 314Right-handed alpha
Helix 14
AB5
A
319 332Right-handed alpha
Helix 15
AB6
A
338 347Right-handed alpha
Helix 16
AB7
A
348 353Right-handed alpha
Helix 17
AB8
A
373 426Right-handed alpha
Helix 18
AB9
A
512 521Right-handed alpha
Helix 19
AC1
A
554 558Right-handed 310
Helix 20
AC2
A
562 569Right-handed alpha
Helix 21
AC3
A
573 583Right-handed alpha
Helix 22
AC4
A
585 590Right-handed alpha
Helix 23
AC5
A
606 622Right-handed alpha
Helix 24
AC6
A
636 650Right-handed alpha
Helix 25
AC7
A
660 667Right-handed 310
Helix 26
AC8
B
70 80Right-handed alpha
Helix 27
AC9
B
88 108Right-handed alpha
Helix 28
AD1
B
110 124Right-handed alpha
Helix 29
AD2
B
127 140Right-handed alpha
Helix 30
AD3
B
140 175Right-handed alpha
Helix 31
AD4
B
178 183Right-handed alpha
Helix 32
AD5
B
192 200Right-handed alpha
Helix 33
AD6
B
200 217Right-handed alpha
Helix 34
AD7
B
217 236Right-handed alpha
Helix 35
AD8
B
240 261Right-handed alpha
Helix 36
AD9
B
264 289Right-handed alpha
Helix 37
AE1
B
289 296Right-handed alpha
Helix 38
AE2
B
300 314Right-handed alpha
Helix 39
AE3
B
319 332Right-handed alpha
Helix 40
AE4
B
338 347Right-handed alpha
Helix 41
AE5
B
348 353Right-handed alpha
Helix 42
AE6
B
373 426Right-handed alpha
Helix 43
AE7
B
512 521Right-handed alpha
Helix 44
AE8
B
554 558Right-handed 310
Helix 45
AE9
B
562 569Right-handed alpha
Helix 46
AF1
B
573 583Right-handed alpha
Helix 47
AF2
B
585 590Right-handed alpha
Helix 48
AF3
B
606 622Right-handed alpha
Helix 49
AF4
B
636 650Right-handed alpha
Helix 50
AF5
B
660 667Right-handed 310
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There are 8 sheets in PDB entry 7VZB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
466 469first strand
Strand 2
A
530 533parallel
Strand 3
A
474 477anti-parallel
Strand 4
A
495 497anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
481 482first strand
Strand 2
A
488 490anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
505 506first strand
Strand 2
A
669 673parallel
Strand 3
A
679 683anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
625 628first strand
Strand 2
A
653 656parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
466 469first strand
Strand 2
B
530 533parallel
Strand 3
B
474 477anti-parallel
Strand 4
B
495 497anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
481 482first strand
Strand 2
B
488 490anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
505 506first strand
Strand 2
B
669 673parallel
Strand 3
B
679 683anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
625 628first strand
Strand 2
B
653 656parallel
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