Analysis of interatomic Contacts of Structural Units in PDB entry:
7VZE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7VZE entry

There are 8 chains in PDB entry 7VZE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 515PRO 603
B
 ASN 514PRO 603
C
 ASP 513PRO 603
D
 ASP 513PRO 603
E
 THR 152LEU 158
F
 ARG 154LEU 158
G
 ARG 154LEU 158
H
 ARG 154LEU 158
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 7VZE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
578 588Right-handed alpha
Helix 2
AA2
A
592 596Right-handed 310
Helix 3
AA3
B
536 539Right-handed 310
Helix 4
AA4
B
551 556Right-handed alpha
Helix 5
AA5
B
578 587Right-handed alpha
Helix 6
AA6
C
551 556Right-handed alpha
Helix 7
AA7
C
573 577Right-handed 310
Helix 8
AA8
C
578 587Right-handed alpha
Helix 9
AA9
C
592 596Right-handed 310
Helix 10
AB1
D
551 556Right-handed alpha
Helix 11
AB2
D
578 587Right-handed alpha
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There are 8 sheets in PDB entry 7VZE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
516 520first strand
Strand 2
A
597 602anti-parallel
Strand 3
A
565 569anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
540 547first strand
Strand 2
A
530 535anti-parallel
Strand 3
E
155 158anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
516 520first strand
Strand 2
B
597 602anti-parallel
Strand 3
B
565 569anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
540 547first strand
Strand 2
B
530 535anti-parallel
Strand 3
F
155 158anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
516 518first strand
Strand 2
C
599 602anti-parallel
Strand 3
C
565 569anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
540 547first strand
Strand 2
C
530 535anti-parallel
Strand 3
G
155 158anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
516 520first strand
Strand 2
D
597 602anti-parallel
Strand 3
D
565 569anti-parallel
Strand 4
D
572 573anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
540 543first strand
Strand 2
D
530 535anti-parallel
Strand 3
H
155 158anti-parallel
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