Analysis of interatomic Contacts of Structural Units in PDB entry:
7VZO

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7VZO entry

There are 2 chains in PDB entry 7VZO (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 3	SER 193
B	ASN 3	SER 193

There are 6 helices in PDB entry 7VZO. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	102	106	Right-handed 310
Helix 2	AA2	A	110	113	Right-handed 310
Helix 3	AA3	A	129	132	Right-handed 310
Helix 4	AA4	B	35	39	Right-handed 310
Helix 5	AA5	B	102	106	Right-handed 310
Helix 6	AA6	B	110	113	Right-handed 310

There are 7 sheets in PDB entry 7VZO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	115	117	first strand
Strand 2	A	186	191	parallel
Strand 3	A	168	176	anti-parallel
Strand 4	A	134	142	anti-parallel
Strand 5	A	5	13	anti-parallel
Strand 6	B	5	13	anti-parallel
Strand 7	B	134	142	anti-parallel
Strand 8	B	168	176	anti-parallel
Strand 9	B	186	191	anti-parallel
Strand 10	B	115	117	parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	179	180	first strand
Strand 2	A	168	176	anti-parallel
Strand 3	A	134	142	anti-parallel
Strand 4	A	5	13	anti-parallel
Strand 5	B	5	13	anti-parallel
Strand 6	B	134	142	anti-parallel
Strand 7	B	168	176	anti-parallel
Strand 8	B	179	180	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	25	30	first strand
Strand 2	A	62	67	anti-parallel
Strand 3	A	50	59	anti-parallel
Strand 4	A	40	44	anti-parallel
Strand 5	A	73	81	anti-parallel
Strand 6	A	84	85	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	25	30	first strand
Strand 2	A	62	67	anti-parallel
Strand 3	A	50	59	anti-parallel
Strand 4	A	40	44	anti-parallel
Strand 5	A	73	81	anti-parallel
Strand 6	A	91	95	anti-parallel

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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	107	109	first strand
Strand 2	A	122	127	anti-parallel
Strand 3	A	157	163	anti-parallel
Strand 4	A	147	152	anti-parallel
Strand 5	B	147	152	anti-parallel
Strand 6	B	157	163	anti-parallel
Strand 7	B	122	127	anti-parallel
Strand 8	B	107	109	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	25	29	first strand
Strand 2	B	63	67	anti-parallel
Strand 3	B	50	57	anti-parallel
Strand 4	B	40	44	anti-parallel
Strand 5	B	73	81	anti-parallel
Strand 6	B	84	85	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	25	29	first strand
Strand 2	B	63	67	anti-parallel
Strand 3	B	50	57	anti-parallel
Strand 4	B	40	44	anti-parallel
Strand 5	B	73	81	anti-parallel
Strand 6	B	91	95	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7VZO

Analysis of interatomic Contacts of Structural Units in PDB entry:
7VZO