Analysis of interatomic Contacts of Structural Units in PDB entry:
7VZR

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7VZR entry

There are 12 chains in PDB entry 7VZR (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 12	ARG 865
C	GLY 18	GLN 218
E	MET 1	ASN 35
F	MET 1	GLY 35
G	ASP 8	ASN 45
H	UNK 1	UNK 19
a	ALA 8	ARG 865
c	VAL 16	ARG 160
e	MET 1	ASN 35
f	MET 1	GLY 35
g	ASP 8	ASN 45
h	UNK 1	UNK 19

There are 90 helices in PDB entry 7VZR. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	12	17	Right-handed 310
Helix 2	AA2	A	23	48	Right-handed alpha
Helix 3	AA3	A	56	69	Right-handed alpha
Helix 4	AA4	A	105	135	Right-handed alpha
Helix 5	AA5	A	142	146	Right-handed alpha
Helix 6	AA6	A	156	160	Right-handed 310
Helix 7	AA7	A	191	217	Right-handed alpha
Helix 8	AA8	A	258	261	Right-handed 310
Helix 9	AA9	A	262	287	Right-handed alpha
Helix 10	AB1	A	294	298	Right-handed 310
Helix 11	AB2	A	299	328	Right-handed alpha
Helix 12	AB3	A	329	337	Right-handed alpha
Helix 13	AB4	A	349	387	Right-handed alpha
Helix 14	AB5	A	389	393	Right-handed 310
Helix 15	AB6	A	395	400	Right-handed alpha
Helix 16	AB7	A	403	438	Right-handed alpha
Helix 17	AB8	A	456	460	Right-handed 310
Helix 18	AB9	A	494	496	Right-handed 310
Helix 19	AC1	A	543	549	Right-handed 310
Helix 20	AC2	A	550	563	Right-handed alpha
Helix 21	AC3	A	564	594	Right-handed alpha
Helix 22	AC4	A	597	610	Right-handed alpha
Helix 23	AC5	A	611	630	Right-handed alpha
Helix 24	AC6	A	648	676	Right-handed alpha
Helix 25	AC7	A	679	686	Right-handed alpha
Helix 26	AC8	A	699	703	Right-handed 310
Helix 27	AC9	A	708	732	Right-handed alpha
Helix 28	AD1	A	745	751	Right-handed alpha
Helix 29	AD2	A	758	772	Right-handed alpha
Helix 30	AD3	A	773	795	Right-handed alpha
Helix 31	AD4	A	797	820	Right-handed alpha
Helix 32	AD5	A	821	825	Right-handed 310
Helix 33	AD6	A	833	859	Right-handed alpha
Helix 34	AD7	C	63	75	Right-handed alpha
Helix 35	AD8	C	83	87	Right-handed 310
Helix 36	AD9	C	102	107	Right-handed alpha
Helix 37	AE1	C	109	125	Right-handed alpha
Helix 38	AE2	C	125	130	Right-handed alpha
Helix 39	AE3	C	145	151	Right-handed alpha
Helix 40	AE4	C	153	164	Right-handed alpha
Helix 41	AE5	C	182	194	Right-handed alpha
Helix 42	AE6	C	206	216	Right-handed alpha
Helix 43	AE7	E	2	28	Right-handed alpha
Helix 44	AE8	F	2	34	Right-handed alpha
Helix 45	AE9	G	10	38	Right-handed alpha
Helix 46	AF1	a	10	14	Right-handed 310
Helix 47	AF2	a	23	48	Right-handed alpha
Helix 48	AF3	a	56	69	Right-handed alpha
Helix 49	AF4	a	91	95	Right-handed 310
Helix 50	AF5	a	105	137	Right-handed alpha
Helix 51	AF6	a	142	147	Right-handed alpha
Helix 52	AF7	a	169	173	Right-handed 310
Helix 53	AF8	a	191	217	Right-handed alpha
Helix 54	AF9	a	258	261	Right-handed 310
Helix 55	AG1	a	262	287	Right-handed alpha
Helix 56	AG2	a	294	298	Right-handed 310
Helix 57	AG3	a	299	328	Right-handed alpha
Helix 58	AG4	a	329	337	Right-handed alpha
Helix 59	AG5	a	349	387	Right-handed alpha
Helix 60	AG6	a	389	393	Right-handed 310
Helix 61	AG7	a	395	400	Right-handed alpha
Helix 62	AG8	a	403	437	Right-handed alpha
Helix 63	AG9	a	457	460	Right-handed 310
Helix 64	AH1	a	494	496	Right-handed 310
Helix 65	AH2	a	543	549	Right-handed 310
Helix 66	AH3	a	550	564	Right-handed alpha
Helix 67	AH4	a	564	594	Right-handed alpha
Helix 68	AH5	a	597	630	Right-handed alpha
Helix 69	AH6	a	648	675	Right-handed alpha
Helix 70	AH7	a	679	685	Right-handed alpha
Helix 71	AH8	a	699	703	Right-handed 310
Helix 72	AH9	a	708	732	Right-handed alpha
Helix 73	AI1	a	745	751	Right-handed alpha
Helix 74	AI2	a	758	772	Right-handed alpha
Helix 75	AI3	a	773	795	Right-handed alpha
Helix 76	AI4	a	797	820	Right-handed alpha
Helix 77	AI5	a	821	825	Right-handed 310
Helix 78	AI6	a	833	859	Right-handed alpha
Helix 79	AI7	c	36	41	Right-handed alpha
Helix 80	AI8	c	43	57	Right-handed alpha
Helix 81	AI9	c	67	83	Right-handed alpha
Helix 82	AJ1	c	110	116	Right-handed alpha
Helix 83	AJ2	c	118	129	Right-handed alpha
Helix 84	AJ3	c	142	155	Right-handed alpha
Helix 85	AJ4	e	2	22	Right-handed alpha
Helix 86	AJ5	f	2	26	Right-handed alpha
Helix 87	AJ6	g	10	15	Right-handed alpha
Helix 88	AJ7	g	18	23	Right-handed alpha
Helix 89	AJ8	g	32	38	Right-handed alpha
Helix 90	AJ9	g	40	44	Right-handed 310

There are 14 sheets in PDB entry 7VZR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	140	141	first strand
Strand 2	A	162	163	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	229	232	first strand
Strand 2	A	235	238	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	249	250	first strand
Strand 2	A	255	256	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	450	453	first strand
Strand 2	A	535	538	anti-parallel
Strand 3	A	522	525	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	462	463	first strand
Strand 2	A	491	492	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	466	468	first strand
Strand 2	A	478	480	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	501	503	first strand
Strand 2	A	517	519	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	140	141	first strand
Strand 2	a	162	163	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	229	232	first strand
Strand 2	a	235	238	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	249	250	first strand
Strand 2	a	255	256	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	450	453	first strand
Strand 2	a	535	538	anti-parallel
Strand 3	a	522	525	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	462	464	first strand
Strand 2	a	490	492	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	466	468	first strand
Strand 2	a	478	480	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	501	503	first strand
Strand 2	a	517	519	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7VZR

Analysis of interatomic Contacts of Structural Units in PDB entry:
7VZR