Analysis of interatomic Contacts of Structural Units in PDB entry:
7VZS

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7VZS entry

There are 2 chains in PDB entry 7VZS (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 4	ALA 569
B	LYS 2	ALA 569

There are 44 helices in PDB entry 7VZS. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	15	26	Right-handed alpha
Helix 2	AA2	A	45	50	Right-handed alpha
Helix 3	AA3	A	88	93	Right-handed 310
Helix 4	AA4	A	102	112	Right-handed alpha
Helix 5	AA5	A	118	129	Right-handed alpha
Helix 6	AA6	A	136	142	Right-handed alpha
Helix 7	AA7	A	147	151	Right-handed 310
Helix 8	AA8	A	168	181	Right-handed alpha
Helix 9	AA9	A	213	219	Right-handed alpha
Helix 10	AB1	A	220	223	Right-handed 310
Helix 11	AB2	A	280	288	Right-handed alpha
Helix 12	AB3	A	292	299	Right-handed alpha
Helix 13	AB4	A	340	346	Right-handed alpha
Helix 14	AB5	A	348	371	Right-handed alpha
Helix 15	AB6	A	376	393	Right-handed alpha
Helix 16	AB7	A	446	465	Right-handed alpha
Helix 17	AB8	A	468	471	Right-handed 310
Helix 18	AB9	A	479	484	Right-handed alpha
Helix 19	AC1	A	489	501	Right-handed alpha
Helix 20	AC2	A	515	519	Right-handed 310
Helix 21	AC3	A	538	542	Right-handed 310
Helix 22	AC4	A	549	569	Right-handed alpha
Helix 23	AC5	B	15	26	Right-handed alpha
Helix 24	AC6	B	45	50	Right-handed alpha
Helix 25	AC7	B	88	93	Right-handed 310
Helix 26	AC8	B	102	113	Right-handed alpha
Helix 27	AC9	B	118	129	Right-handed alpha
Helix 28	AD1	B	136	142	Right-handed alpha
Helix 29	AD2	B	147	151	Right-handed 310
Helix 30	AD3	B	168	181	Right-handed alpha
Helix 31	AD4	B	213	219	Right-handed alpha
Helix 32	AD5	B	220	223	Right-handed 310
Helix 33	AD6	B	280	288	Right-handed alpha
Helix 34	AD7	B	292	299	Right-handed alpha
Helix 35	AD8	B	340	346	Right-handed alpha
Helix 36	AD9	B	348	358	Right-handed alpha
Helix 37	AE1	B	359	371	Right-handed alpha
Helix 38	AE2	B	376	393	Right-handed alpha
Helix 39	AE3	B	446	465	Right-handed alpha
Helix 40	AE4	B	468	471	Right-handed 310
Helix 41	AE5	B	489	501	Right-handed alpha
Helix 42	AE6	B	515	519	Right-handed 310
Helix 43	AE7	B	538	542	Right-handed 310
Helix 44	AE8	B	549	569	Right-handed alpha

There are 18 sheets in PDB entry 7VZS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	228	231	first strand
Strand 2	A	33	36	parallel
Strand 3	A	6	12	parallel
Strand 4	A	263	274	parallel
Strand 5	A	251	257	anti-parallel
Strand 6	A	235	241	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	228	231	first strand
Strand 2	A	33	36	parallel
Strand 3	A	6	12	parallel
Strand 4	A	263	274	parallel
Strand 5	A	534	536	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	66	67	first strand
Strand 2	A	80	81	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	130	132	first strand
Strand 2	A	157	159	parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	196	198	first strand
Strand 2	A	335	338	anti-parallel
Strand 3	A	399	405	anti-parallel
Strand 4	A	410	417	anti-parallel
Strand 5	A	318	326	anti-parallel
Strand 6	A	473	478	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	196	198	first strand
Strand 2	A	335	338	anti-parallel
Strand 3	A	399	405	anti-parallel
Strand 4	A	410	417	anti-parallel
Strand 5	A	318	326	anti-parallel
Strand 6	A	502	503	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	204	205	first strand
Strand 2	A	210	211	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	290	291	first strand
Strand 2	A	305	306	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	425	427	first strand
Strand 2	A	438	440	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	228	231	first strand
Strand 2	B	33	36	parallel
Strand 3	B	6	12	parallel
Strand 4	B	263	274	parallel
Strand 5	B	251	257	anti-parallel
Strand 6	B	235	241	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	228	231	first strand
Strand 2	B	33	36	parallel
Strand 3	B	6	12	parallel
Strand 4	B	263	274	parallel
Strand 5	B	534	536	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	66	67	first strand
Strand 2	B	80	81	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	130	132	first strand
Strand 2	B	157	159	parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	196	198	first strand
Strand 2	B	335	338	anti-parallel
Strand 3	B	399	405	anti-parallel
Strand 4	B	410	417	anti-parallel
Strand 5	B	318	326	anti-parallel
Strand 6	B	473	478	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	196	198	first strand
Strand 2	B	335	338	anti-parallel
Strand 3	B	399	405	anti-parallel
Strand 4	B	410	417	anti-parallel
Strand 5	B	318	326	anti-parallel
Strand 6	B	502	503	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	204	205	first strand
Strand 2	B	210	211	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	290	291	first strand
Strand 2	B	305	306	parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	425	427	first strand
Strand 2	B	438	440	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7VZS

Analysis of interatomic Contacts of Structural Units in PDB entry:
7VZS