Analysis of interatomic Contacts of Structural Units in PDB entry:
7W07


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7W07 entry

There is 1 chain in PDB entry 7W07 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 88PRO 292
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 7W07. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
100 104Right-handed 310
Helix 2
AA2
A
105 118Right-handed alpha
Helix 3
AA3
A
129 139Right-handed alpha
Helix 4
AA4
A
153 155Right-handed 310
Helix 5
AA5
A
175 180Right-handed 310
Helix 6
AA6
A
184 189Right-handed 310
Helix 7
AA7
A
197 200Right-handed 310
Helix 8
AA8
A
201 215Right-handed alpha
Helix 9
AA9
A
227 237Right-handed alpha
Helix 10
AB1
A
247 251Right-handed 310
Helix 11
AB2
A
280 291Right-handed alpha
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There are 3 sheets in PDB entry 7W07. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
121 127first strand
Strand 2
A
91 97parallel
Strand 3
A
144 147parallel
Strand 4
A
267 275anti-parallel
Strand 5
A
157 172anti-parallel
Strand 6
A
242 245anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
121 127first strand
Strand 2
A
91 97parallel
Strand 3
A
144 147parallel
Strand 4
A
267 275anti-parallel
Strand 5
A
157 172anti-parallel
Strand 6
A
256 260anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
192 195first strand
Strand 2
A
220 224parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il