Analysis of interatomic Contacts of Structural Units in PDB entry:
7W08

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7W08 entry

There are 8 chains in PDB entry 7W08 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
C	VAL 86	PRO 292
D	GLU 89	PRO 292
A	VAL 86	PRO 292
B	GLY 91	PRO 292
E	VAL 86	PRO 292
F	GLY 88	PRO 292
G	VAL 86	PRO 292
H	VAL 86	PRO 292

There are 74 helices in PDB entry 7W08. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	C	100	104	Right-handed 310
Helix 2	AA2	C	105	118	Right-handed alpha
Helix 3	AA3	C	129	139	Right-handed alpha
Helix 4	AA4	C	175	179	Right-handed 310
Helix 5	AA5	C	184	189	Right-handed 310
Helix 6	AA6	C	198	200	Right-handed 310
Helix 7	AA7	C	201	215	Right-handed alpha
Helix 8	AA8	C	227	237	Right-handed alpha
Helix 9	AA9	C	247	251	Right-handed 310
Helix 10	AB1	C	280	291	Right-handed alpha
Helix 11	AB2	D	100	104	Right-handed 310
Helix 12	AB3	D	105	118	Right-handed alpha
Helix 13	AB4	D	129	139	Right-handed alpha
Helix 14	AB5	D	175	180	Right-handed 310
Helix 15	AB6	D	185	189	Right-handed 310
Helix 16	AB7	D	196	201	Right-handed alpha
Helix 17	AB8	D	201	216	Right-handed alpha
Helix 18	AB9	D	231	237	Right-handed alpha
Helix 19	AC1	D	247	251	Right-handed 310
Helix 20	AC2	D	280	291	Right-handed alpha
Helix 21	AC3	A	105	118	Right-handed alpha
Helix 22	AC4	A	129	140	Right-handed alpha
Helix 23	AC5	A	153	155	Right-handed 310
Helix 24	AC6	A	175	180	Right-handed 310
Helix 25	AC7	A	184	189	Right-handed 310
Helix 26	AC8	A	202	215	Right-handed alpha
Helix 27	AC9	A	227	237	Right-handed alpha
Helix 28	AD1	A	247	251	Right-handed 310
Helix 29	AD2	A	280	291	Right-handed alpha
Helix 30	AD3	B	98	103	Right-handed alpha
Helix 31	AD4	B	105	118	Right-handed alpha
Helix 32	AD5	B	129	140	Right-handed alpha
Helix 33	AD6	B	153	155	Right-handed 310
Helix 34	AD7	B	175	180	Right-handed 310
Helix 35	AD8	B	184	189	Right-handed 310
Helix 36	AD9	B	201	216	Right-handed alpha
Helix 37	AE1	B	230	237	Right-handed alpha
Helix 38	AE2	B	247	251	Right-handed 310
Helix 39	AE3	B	280	291	Right-handed alpha
Helix 40	AE4	E	105	118	Right-handed alpha
Helix 41	AE5	E	129	140	Right-handed alpha
Helix 42	AE6	E	153	157	Right-handed 310
Helix 43	AE7	E	175	180	Right-handed 310
Helix 44	AE8	E	201	214	Right-handed alpha
Helix 45	AE9	E	227	237	Right-handed alpha
Helix 46	AF1	E	247	251	Right-handed 310
Helix 47	AF2	E	280	291	Right-handed alpha
Helix 48	AF3	F	105	118	Right-handed alpha
Helix 49	AF4	F	129	140	Right-handed alpha
Helix 50	AF5	F	175	179	Right-handed 310
Helix 51	AF6	F	184	189	Right-handed 310
Helix 52	AF7	F	196	201	Right-handed alpha
Helix 53	AF8	F	201	216	Right-handed alpha
Helix 54	AF9	F	230	236	Right-handed alpha
Helix 55	AG1	F	247	251	Right-handed 310
Helix 56	AG2	F	280	291	Right-handed alpha
Helix 57	AG3	G	100	104	Right-handed 310
Helix 58	AG4	G	105	118	Right-handed alpha
Helix 59	AG5	G	129	140	Right-handed alpha
Helix 60	AG6	G	153	155	Right-handed 310
Helix 61	AG7	G	175	179	Right-handed 310
Helix 62	AG8	G	203	215	Right-handed alpha
Helix 63	AG9	G	227	237	Right-handed alpha
Helix 64	AH1	G	245	251	Right-handed 310
Helix 65	AH2	G	280	291	Right-handed alpha
Helix 66	AH3	H	100	104	Right-handed 310
Helix 67	AH4	H	105	118	Right-handed alpha
Helix 68	AH5	H	129	140	Right-handed alpha
Helix 69	AH6	H	175	180	Right-handed 310
Helix 70	AH7	H	185	189	Right-handed 310
Helix 71	AH8	H	200	215	Right-handed alpha
Helix 72	AH9	H	230	237	Right-handed alpha
Helix 73	AI1	H	247	251	Right-handed 310
Helix 74	AI2	H	280	291	Right-handed alpha

There are 25 sheets in PDB entry 7W08. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	122	127	first strand
Strand 2	C	92	97	parallel
Strand 3	C	144	147	parallel
Strand 4	C	268	275	anti-parallel
Strand 5	C	157	165	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	242	245	first strand
Strand 2	C	167	172	anti-parallel
Strand 3	C	256	260	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	192	195	first strand
Strand 2	C	220	224	parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	121	127	first strand
Strand 2	D	91	97	parallel
Strand 3	D	144	147	parallel
Strand 4	D	268	275	anti-parallel
Strand 5	D	157	165	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	241	245	first strand
Strand 2	D	167	172	anti-parallel
Strand 3	D	256	259	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	192	193	first strand
Strand 2	D	220	221	parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	122	127	first strand
Strand 2	A	92	97	parallel
Strand 3	A	144	147	parallel
Strand 4	A	268	275	anti-parallel
Strand 5	A	157	165	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	182	183	first strand
Strand 2	A	256	261	parallel
Strand 3	A	167	172	anti-parallel
Strand 4	A	242	245	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	192	193	first strand
Strand 2	A	220	221	parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	122	127	first strand
Strand 2	B	92	97	parallel
Strand 3	B	144	147	parallel
Strand 4	B	267	275	anti-parallel
Strand 5	B	157	172	anti-parallel
Strand 6	B	256	261	anti-parallel
Strand 7	B	182	183	parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	122	127	first strand
Strand 2	B	92	97	parallel
Strand 3	B	144	147	parallel
Strand 4	B	267	275	anti-parallel
Strand 5	B	157	172	anti-parallel
Strand 6	B	242	245	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	192	193	first strand
Strand 2	B	220	221	parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	122	127	first strand
Strand 2	E	92	97	parallel
Strand 3	E	144	147	parallel
Strand 4	E	268	274	anti-parallel
Strand 5	E	160	165	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	182	183	first strand
Strand 2	E	256	261	parallel
Strand 3	E	167	172	anti-parallel
Strand 4	E	242	245	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	192	193	first strand
Strand 2	E	220	221	parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	121	127	first strand
Strand 2	F	91	97	parallel
Strand 3	F	144	147	parallel
Strand 4	F	271	275	anti-parallel
Strand 5	F	157	161	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	182	183	first strand
Strand 2	F	256	261	parallel
Strand 3	F	165	172	anti-parallel
Strand 4	F	242	245	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	182	183	first strand
Strand 2	F	256	261	parallel
Strand 3	F	165	172	anti-parallel
Strand 4	F	267	268	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	192	193	first strand
Strand 2	F	220	221	parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	121	127	first strand
Strand 2	G	91	97	parallel
Strand 3	G	144	146	parallel
Strand 4	G	267	275	anti-parallel
Strand 5	G	157	166	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	242	244	first strand
Strand 2	G	168	172	anti-parallel
Strand 3	G	256	259	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	192	193	first strand
Strand 2	G	220	221	parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	121	127	first strand
Strand 2	H	91	97	parallel
Strand 3	H	144	147	parallel
Strand 4	H	268	275	anti-parallel
Strand 5	H	157	165	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	242	245	first strand
Strand 2	H	167	172	anti-parallel
Strand 3	H	256	259	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	192	193	first strand
Strand 2	H	220	221	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7W08

Analysis of interatomic Contacts of Structural Units in PDB entry:
7W08