Analysis of interatomic Contacts of Structural Units in PDB entry:
7W0C


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7W0C entry

There are 4 chains in PDB entry 7W0C (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 2VAL 1652
B
 ILE 344ILE 359
C
 G 1 A 35
D
 U 16 U 52
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 73 helices in PDB entry 7W0C. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
3 7Right-handed 310
Helix 2
AA2
A
9 22Right-handed alpha
Helix 3
AA3
A
33 44Right-handed alpha
Helix 4
AA4
A
52 56Right-handed 310
Helix 5
AA5
A
66 81Right-handed alpha
Helix 6
AA6
A
98 109Right-handed alpha
Helix 7
AA7
A
115 125Right-handed alpha
Helix 8
AA8
A
129 131Right-handed 310
Helix 9
AA9
A
141 144Right-handed 310
Helix 10
AB1
A
148 160Right-handed alpha
Helix 11
AB2
A
183 195Right-handed alpha
Helix 12
AB3
A
208 213Right-handed alpha
Helix 13
AB4
A
232 252Right-handed alpha
Helix 14
AB5
A
271 292Right-handed alpha
Helix 15
AB6
A
292 314Right-handed alpha
Helix 16
AB7
A
316 345Right-handed alpha
Helix 17
AB8
A
350 362Right-handed alpha
Helix 18
AB9
A
364 378Right-handed alpha
Helix 19
AC1
A
382 386Right-handed 310
Helix 20
AC2
A
394 412Right-handed alpha
Helix 21
AC3
A
414 418Right-handed 310
Helix 22
AC4
A
445 452Right-handed alpha
Helix 23
AC5
A
484 495Right-handed alpha
Helix 24
AC6
A
510 535Right-handed alpha
Helix 25
AC7
A
543 550Right-handed alpha
Helix 26
AC8
A
561 563Right-handed 310
Helix 27
AC9
A
567 569Right-handed 310
Helix 28
AD1
A
570 581Right-handed alpha
Helix 29
AD2
A
598 606Right-handed alpha
Helix 30
AD3
A
607 612Right-handed 310
Helix 31
AD4
A
637 656Right-handed alpha
Helix 32
AD5
A
667 680Right-handed alpha
Helix 33
AD6
A
681 687Right-handed 310
Helix 34
AD7
A
692 699Right-handed 310
Helix 35
AD8
A
741 749Right-handed alpha
Helix 36
AD9
A
792 809Right-handed alpha
Helix 37
AE1
A
845 852Right-handed alpha
Helix 38
AE2
A
862 867Right-handed alpha
Helix 39
AE3
A
873 877Right-handed 310
Helix 40
AE4
A
916 925Right-handed alpha
Helix 41
AE5
A
925 930Right-handed alpha
Helix 42
AE6
A
962 968Right-handed alpha
Helix 43
AE7
A
983 990Right-handed alpha
Helix 44
AE8
A
991 1016Right-handed alpha
Helix 45
AE9
A
1024 1028Right-handed 310
Helix 46
AF1
A
1174 1182Right-handed alpha
Helix 47
AF2
A
1183 1186Right-handed 310
Helix 48
AF3
A
1190 1199Right-handed alpha
Helix 49
AF4
A
1200 1204Right-handed 310
Helix 50
AF5
A
1209 1232Right-handed alpha
Helix 51
AF6
A
1236 1248Right-handed alpha
Helix 52
AF7
A
1249 1259Right-handed alpha
Helix 53
AF8
A
1262 1266Right-handed 310
Helix 54
AF9
A
1285 1295Right-handed alpha
Helix 55
AG1
A
1295 1300Right-handed alpha
Helix 56
AG2
A
1303 1309Right-handed alpha
Helix 57
AG3
A
1313 1319Right-handed alpha
Helix 58
AG4
A
1324 1339Right-handed alpha
Helix 59
AG5
A
1348 1353Right-handed alpha
Helix 60
AG6
A
1354 1356Right-handed 310
Helix 61
AG7
A
1362 1393Right-handed alpha
Helix 62
AG8
A
1403 1408Right-handed alpha
Helix 63
AG9
A
1408 1413Right-handed alpha
Helix 64
AH1
A
1416 1421Right-handed 310
Helix 65
AH2
A
1425 1430Right-handed alpha
Helix 66
AH3
A
1433 1441Right-handed alpha
Helix 67
AH4
A
1447 1455Right-handed alpha
Helix 68
AH5
A
1468 1491Right-handed alpha
Helix 69
AH6
A
1495 1507Right-handed alpha
Helix 70
AH7
A
1508 1519Right-handed alpha
Helix 71
AH8
A
1529 1546Right-handed alpha
Helix 72
AH9
A
1609 1628Right-handed alpha
Helix 73
AI1
A
1629 1651Right-handed alpha
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There are 9 sheets in PDB entry 7W0C. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
111 114first strand
Strand 2
A
59 63parallel
Strand 3
A
133 139parallel
Strand 4
A
167 172parallel
Strand 5
A
24 27parallel
Strand 6
A
198 200parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
219 225first strand
Strand 2
A
501 507parallel
Strand 3
A
475 478parallel
Strand 4
A
388 391parallel
Strand 5
A
457 460parallel
Strand 6
A
423 424parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
558 559first strand
Strand 2
A
565 566anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
593 596first strand
Strand 2
A
616 619anti-parallel
Strand 3
A
629 631anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
703 706first strand
Strand 2
A
1358 1361anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
768 772first strand
Strand 2
A
775 781anti-parallel
Strand 3
A
723 733anti-parallel
Strand 4
A
786 789anti-parallel
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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
768 772first strand
Strand 2
A
775 781anti-parallel
Strand 3
A
723 733anti-parallel
Strand 4
A
753 758anti-parallel
Strand 5
A
830 836anti-parallel
Strand 6
A
842 844anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
819 820first strand
Strand 2
A
1282 1283anti-parallel
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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
970 971first strand
Strand 2
A
939 943anti-parallel
Strand 3
A
893 899anti-parallel
Strand 4
A
880 883anti-parallel
Strand 5
A
977 982anti-parallel
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