Analysis of interatomic Contacts of Structural Units in PDB entry:
7W0D

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7W0D entry

There are 6 chains in PDB entry 7W0D (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	ILE 344	ILE 359
D	G 1	U 52
G	TYR 347	ILE 359
A	GLU 2	ALA 1722
F	GLU 2	GLU 661
C	G 1	U 52

There are102 helices in PDB entry 7W0D. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	9	22	Right-handed alpha
Helix 2	AA2	A	33	43	Right-handed alpha
Helix 3	AA3	A	66	81	Right-handed alpha
Helix 4	AA4	A	93	97	Right-handed 310
Helix 5	AA5	A	99	108	Right-handed alpha
Helix 6	AA6	A	115	125	Right-handed alpha
Helix 7	AA7	A	129	131	Right-handed 310
Helix 8	AA8	A	141	144	Right-handed 310
Helix 9	AA9	A	148	160	Right-handed alpha
Helix 10	AB1	A	183	195	Right-handed alpha
Helix 11	AB2	A	204	213	Right-handed alpha
Helix 12	AB3	A	232	252	Right-handed alpha
Helix 13	AB4	A	271	292	Right-handed alpha
Helix 14	AB5	A	293	314	Right-handed alpha
Helix 15	AB6	A	316	343	Right-handed alpha
Helix 16	AB7	A	350	363	Right-handed alpha
Helix 17	AB8	A	364	379	Right-handed alpha
Helix 18	AB9	A	394	410	Right-handed alpha
Helix 19	AC1	A	445	452	Right-handed alpha
Helix 20	AC2	A	461	465	Right-handed 310
Helix 21	AC3	A	484	495	Right-handed alpha
Helix 22	AC4	A	510	534	Right-handed alpha
Helix 23	AC5	A	543	552	Right-handed alpha
Helix 24	AC6	A	561	563	Right-handed 310
Helix 25	AC7	A	567	569	Right-handed 310
Helix 26	AC8	A	570	582	Right-handed alpha
Helix 27	AC9	A	598	606	Right-handed alpha
Helix 28	AD1	A	608	613	Right-handed alpha
Helix 29	AD2	A	637	656	Right-handed alpha
Helix 30	AD3	A	667	680	Right-handed alpha
Helix 31	AD4	A	683	687	Right-handed 310
Helix 32	AD5	A	741	748	Right-handed alpha
Helix 33	AD6	A	792	810	Right-handed alpha
Helix 34	AD7	A	845	852	Right-handed alpha
Helix 35	AD8	A	862	869	Right-handed alpha
Helix 36	AD9	A	916	930	Right-handed alpha
Helix 37	AE1	A	960	965	Right-handed alpha
Helix 38	AE2	A	972	976	Right-handed 310
Helix 39	AE3	A	982	991	Right-handed alpha
Helix 40	AE4	A	991	1016	Right-handed alpha
Helix 41	AE5	A	1020	1024	Right-handed 310
Helix 42	AE6	A	1174	1182	Right-handed alpha
Helix 43	AE7	A	1183	1186	Right-handed 310
Helix 44	AE8	A	1190	1199	Right-handed alpha
Helix 45	AE9	A	1209	1232	Right-handed alpha
Helix 46	AF1	A	1236	1248	Right-handed alpha
Helix 47	AF2	A	1249	1259	Right-handed alpha
Helix 48	AF3	A	1262	1266	Right-handed 310
Helix 49	AF4	A	1272	1277	Right-handed alpha
Helix 50	AF5	A	1285	1294	Right-handed alpha
Helix 51	AF6	A	1295	1300	Right-handed alpha
Helix 52	AF7	A	1303	1310	Right-handed alpha
Helix 53	AF8	A	1313	1319	Right-handed alpha
Helix 54	AF9	A	1324	1337	Right-handed alpha
Helix 55	AG1	A	1338	1341	Right-handed 310
Helix 56	AG2	A	1348	1353	Right-handed alpha
Helix 57	AG3	A	1362	1381	Right-handed alpha
Helix 58	AG4	A	1382	1393	Right-handed alpha
Helix 59	AG5	A	1402	1406	Right-handed 310
Helix 60	AG6	A	1408	1412	Right-handed 310
Helix 61	AG7	A	1416	1420	Right-handed 310
Helix 62	AG8	A	1425	1430	Right-handed alpha
Helix 63	AG9	A	1432	1441	Right-handed alpha
Helix 64	AH1	A	1447	1454	Right-handed alpha
Helix 65	AH2	A	1468	1491	Right-handed alpha
Helix 66	AH3	A	1495	1508	Right-handed alpha
Helix 67	AH4	A	1508	1519	Right-handed alpha
Helix 68	AH5	A	1530	1547	Right-handed alpha
Helix 69	AH6	A	1609	1628	Right-handed alpha
Helix 70	AH7	A	1629	1651	Right-handed alpha
Helix 71	AH8	A	1657	1662	Right-handed alpha
Helix 72	AH9	A	1701	1722	Right-handed alpha
Helix 73	AI1	F	9	22	Right-handed alpha
Helix 74	AI2	F	33	45	Right-handed alpha
Helix 75	AI3	F	46	49	Right-handed 310
Helix 76	AI4	F	52	56	Right-handed 310
Helix 77	AI5	F	66	81	Right-handed alpha
Helix 78	AI6	F	89	97	Right-handed 310
Helix 79	AI7	F	99	109	Right-handed alpha
Helix 80	AI8	F	116	125	Right-handed alpha
Helix 81	AI9	F	129	131	Right-handed 310
Helix 82	AJ1	F	140	144	Right-handed 310
Helix 83	AJ2	F	148	160	Right-handed alpha
Helix 84	AJ3	F	183	195	Right-handed alpha
Helix 85	AJ4	F	208	213	Right-handed alpha
Helix 86	AJ5	F	232	252	Right-handed alpha
Helix 87	AJ6	F	271	313	Right-handed alpha
Helix 88	AJ7	F	316	344	Right-handed alpha
Helix 89	AJ8	F	350	362	Right-handed alpha
Helix 90	AJ9	F	364	379	Right-handed alpha
Helix 91	AK1	F	382	386	Right-handed 310
Helix 92	AK2	F	394	411	Right-handed alpha
Helix 93	AK3	F	412	416	Right-handed 310
Helix 94	AK4	F	445	452	Right-handed alpha
Helix 95	AK5	F	484	495	Right-handed alpha
Helix 96	AK6	F	510	535	Right-handed alpha
Helix 97	AK7	F	543	552	Right-handed alpha
Helix 98	AK8	F	567	569	Right-handed 310
Helix 99	AK9	F	570	582	Right-handed alpha
Helix 100	AL1	F	598	606	Right-handed alpha
Helix 101	AL2	F	607	611	Right-handed 310
Helix 102	AL3	F	637	656	Right-handed alpha

There are 15 sheets in PDB entry 7W0D. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	357	358	first strand
Strand 2	A	219	225	anti-parallel
Strand 3	A	501	507	parallel
Strand 4	A	475	478	parallel
Strand 5	A	388	391	parallel
Strand 6	A	457	460	parallel
Strand 7	A	421	423	parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	357	358	first strand
Strand 2	F	219	224	anti-parallel
Strand 3	F	501	506	parallel
Strand 4	F	475	478	parallel
Strand 5	F	388	391	parallel
Strand 6	F	457	460	parallel
Strand 7	F	423	424	parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	85	88	first strand
Strand 2	A	111	114	parallel
Strand 3	A	59	63	parallel
Strand 4	A	133	139	parallel
Strand 5	A	167	171	parallel
Strand 6	A	24	26	parallel
Strand 7	A	198	200	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	558	559	first strand
Strand 2	A	565	566	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	594	596	first strand
Strand 2	A	616	618	anti-parallel
Strand 3	A	630	631	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	703	706	first strand
Strand 2	A	1358	1361	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	768	772	first strand
Strand 2	A	775	781	anti-parallel
Strand 3	A	723	733	anti-parallel
Strand 4	A	786	789	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	768	772	first strand
Strand 2	A	775	781	anti-parallel
Strand 3	A	723	733	anti-parallel
Strand 4	A	754	758	anti-parallel
Strand 5	A	830	836	anti-parallel
Strand 6	A	842	844	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	819	820	first strand
Strand 2	A	1282	1283	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	969	971	first strand
Strand 2	A	939	943	anti-parallel
Strand 3	A	893	899	anti-parallel
Strand 4	A	881	883	anti-parallel
Strand 5	A	977	979	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1669	1670	first strand
Strand 2	A	1684	1688	anti-parallel
Strand 3	A	1691	1695	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1674	1676	first strand
Strand 2	A	1679	1681	anti-parallel

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There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	85	88	first strand
Strand 2	F	111	115	parallel
Strand 3	F	59	64	parallel
Strand 4	F	133	138	parallel
Strand 5	F	167	172	parallel
Strand 6	F	24	27	parallel
Strand 7	F	198	200	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	558	559	first strand
Strand 2	F	565	566	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	593	597	first strand
Strand 2	F	615	619	anti-parallel
Strand 3	F	630	631	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7W0D

Analysis of interatomic Contacts of Structural Units in PDB entry:
7W0D