Analysis of interatomic Contacts of Structural Units in PDB entry:
7W0F


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7W0F entry

There are 6 chains in PDB entry 7W0F (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 2ILE 1654
B
 ILE 344ILE 359
C
 G 1 G 21
D
 G 32 U 52
E
 C 27 U 52
F
 G 1 U 26
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 75 helices in PDB entry 7W0F. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
11 22Right-handed alpha
Helix 2
AA2
A
33 45Right-handed alpha
Helix 3
AA3
A
52 56Right-handed 310
Helix 4
AA4
A
66 80Right-handed alpha
Helix 5
AA5
A
98 109Right-handed alpha
Helix 6
AA6
A
115 125Right-handed alpha
Helix 7
AA7
A
129 131Right-handed 310
Helix 8
AA8
A
141 144Right-handed 310
Helix 9
AA9
A
148 160Right-handed alpha
Helix 10
AB1
A
184 196Right-handed alpha
Helix 11
AB2
A
204 213Right-handed alpha
Helix 12
AB3
A
214 216Right-handed 310
Helix 13
AB4
A
232 251Right-handed alpha
Helix 14
AB5
A
271 292Right-handed alpha
Helix 15
AB6
A
292 313Right-handed alpha
Helix 16
AB7
A
316 344Right-handed alpha
Helix 17
AB8
A
350 363Right-handed alpha
Helix 18
AB9
A
364 379Right-handed alpha
Helix 19
AC1
A
382 386Right-handed 310
Helix 20
AC2
A
394 411Right-handed alpha
Helix 21
AC3
A
412 417Right-handed alpha
Helix 22
AC4
A
445 452Right-handed alpha
Helix 23
AC5
A
462 465Right-handed 310
Helix 24
AC6
A
484 494Right-handed alpha
Helix 25
AC7
A
510 529Right-handed alpha
Helix 26
AC8
A
529 535Right-handed alpha
Helix 27
AC9
A
543 553Right-handed alpha
Helix 28
AD1
A
561 563Right-handed 310
Helix 29
AD2
A
567 569Right-handed 310
Helix 30
AD3
A
570 580Right-handed alpha
Helix 31
AD4
A
598 602Right-handed 310
Helix 32
AD5
A
607 611Right-handed 310
Helix 33
AD6
A
637 656Right-handed alpha
Helix 34
AD7
A
668 681Right-handed alpha
Helix 35
AD8
A
682 687Right-handed 310
Helix 36
AD9
A
738 740Right-handed 310
Helix 37
AE1
A
741 750Right-handed alpha
Helix 38
AE2
A
792 810Right-handed alpha
Helix 39
AE3
A
845 852Right-handed alpha
Helix 40
AE4
A
862 869Right-handed alpha
Helix 41
AE5
A
873 877Right-handed 310
Helix 42
AE6
A
916 926Right-handed alpha
Helix 43
AE7
A
927 929Right-handed 310
Helix 44
AE8
A
954 958Right-handed 310
Helix 45
AE9
A
972 974Right-handed 310
Helix 46
AF1
A
983 990Right-handed alpha
Helix 47
AF2
A
991 1015Right-handed alpha
Helix 48
AF3
A
1020 1024Right-handed 310
Helix 49
AF4
A
1034 1038Right-handed 310
Helix 50
AF5
A
1174 1179Right-handed alpha
Helix 51
AF6
A
1190 1199Right-handed alpha
Helix 52
AF7
A
1200 1204Right-handed 310
Helix 53
AF8
A
1209 1232Right-handed alpha
Helix 54
AF9
A
1236 1249Right-handed alpha
Helix 55
AG1
A
1249 1260Right-handed alpha
Helix 56
AG2
A
1261 1266Right-handed 310
Helix 57
AG3
A
1285 1294Right-handed alpha
Helix 58
AG4
A
1295 1299Right-handed 310
Helix 59
AG5
A
1303 1308Right-handed alpha
Helix 60
AG6
A
1313 1319Right-handed alpha
Helix 61
AG7
A
1324 1339Right-handed alpha
Helix 62
AG8
A
1353 1356Right-handed 310
Helix 63
AG9
A
1363 1393Right-handed alpha
Helix 64
AH1
A
1422 1430Right-handed alpha
Helix 65
AH2
A
1433 1441Right-handed alpha
Helix 66
AH3
A
1447 1454Right-handed alpha
Helix 67
AH4
A
1461 1466Right-handed alpha
Helix 68
AH5
A
1468 1490Right-handed alpha
Helix 69
AH6
A
1495 1508Right-handed alpha
Helix 70
AH7
A
1508 1519Right-handed alpha
Helix 71
AH8
A
1520 1524Right-handed 310
Helix 72
AH9
A
1529 1546Right-handed alpha
Helix 73
AI1
A
1602 1606Right-handed 310
Helix 74
AI2
A
1609 1628Right-handed alpha
Helix 75
AI3
A
1629 1648Right-handed alpha
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There are 9 sheets in PDB entry 7W0F. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
85 88first strand
Strand 2
A
111 114parallel
Strand 3
A
59 63parallel
Strand 4
A
133 139parallel
Strand 5
A
167 172parallel
Strand 6
A
24 27parallel
Strand 7
A
198 200parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
421 424first strand
Strand 2
A
457 460parallel
Strand 3
A
388 391parallel
Strand 4
A
475 478parallel
Strand 5
A
501 507parallel
Strand 6
A
219 225parallel
Strand 7
B
357 358anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
558 559first strand
Strand 2
A
565 566anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
593 596first strand
Strand 2
A
616 619anti-parallel
Strand 3
A
629 631anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
702 706first strand
Strand 2
A
1358 1362anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
768 771first strand
Strand 2
A
776 781anti-parallel
Strand 3
A
723 733anti-parallel
Strand 4
A
786 789anti-parallel
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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
768 771first strand
Strand 2
A
776 781anti-parallel
Strand 3
A
723 733anti-parallel
Strand 4
A
753 758anti-parallel
Strand 5
A
830 836anti-parallel
Strand 6
A
842 844anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
819 820first strand
Strand 2
A
1282 1283anti-parallel
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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
969 971first strand
Strand 2
A
939 943anti-parallel
Strand 3
A
893 899anti-parallel
Strand 4
A
880 884anti-parallel
Strand 5
A
976 982anti-parallel
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