Analysis of interatomic Contacts of Structural Units in PDB entry:
7W0O

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7W0O entry

There are 6 chains in PDB entry 7W0O (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 5	PHE 354
B	GLU 3	ASN 340
C	ALA 38	PHE 92
D	LEU 18	PRO 32
R	SER 26	GLN 318
S	ASP 1	LYS 248

There are 27 helices in PDB entry 7W0O. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	6	31	Right-handed alpha
Helix 2	AA2	A	45	55	Right-handed alpha
Helix 3	AA3	A	212	216	Right-handed 310
Helix 4	AA4	A	241	255	Right-handed alpha
Helix 5	AA5	A	256	260	Right-handed 310
Helix 6	AA6	A	271	279	Right-handed alpha
Helix 7	AA7	A	282	286	Right-handed 310
Helix 8	AA8	A	295	310	Right-handed alpha
Helix 9	AA9	A	330	351	Right-handed alpha
Helix 10	AB1	B	4	26	Right-handed alpha
Helix 11	AB2	B	29	34	Right-handed alpha
Helix 12	AB3	B	280	282	Right-handed 310
Helix 13	AB4	C	39	55	Right-handed alpha
Helix 14	AB5	C	60	76	Right-handed alpha
Helix 15	AB6	R	32	56	Right-handed alpha
Helix 16	AB7	R	64	80	Right-handed alpha
Helix 17	AB8	R	82	89	Right-handed alpha
Helix 18	AB9	R	97	131	Right-handed alpha
Helix 19	AC1	R	148	162	Right-handed alpha
Helix 20	AC2	R	163	165	Right-handed 310
Helix 21	AC3	R	190	209	Right-handed alpha
Helix 22	AC4	R	210	232	Right-handed alpha
Helix 23	AC5	R	236	261	Right-handed alpha
Helix 24	AC6	R	262	277	Right-handed alpha
Helix 25	AC7	R	280	310	Right-handed alpha
Helix 26	AC8	S	52	56	Right-handed 310
Helix 27	AC9	S	87	91	Right-handed 310

There are 13 sheets in PDB entry 7W0O. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	187	190	first strand
Strand 2	A	195	198	anti-parallel
Strand 3	A	34	39	parallel
Strand 4	A	220	225	parallel
Strand 5	A	263	268	parallel
Strand 6	A	322	323	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	46	51	first strand
Strand 2	B	336	340	anti-parallel
Strand 3	B	327	331	anti-parallel
Strand 4	B	315	320	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	63	first strand
Strand 2	B	69	74	anti-parallel
Strand 3	B	78	83	anti-parallel
Strand 4	B	89	94	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	102	105	first strand
Strand 2	B	111	115	anti-parallel
Strand 3	B	121	125	anti-parallel
Strand 4	B	134	139	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	148	151	first strand
Strand 2	B	156	160	anti-parallel
Strand 3	B	166	170	anti-parallel
Strand 4	B	175	180	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	191	192	first strand
Strand 2	B	198	200	anti-parallel
Strand 3	B	208	212	anti-parallel
Strand 4	B	220	222	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	229	234	first strand
Strand 2	B	240	245	anti-parallel
Strand 3	B	250	254	anti-parallel
Strand 4	B	260	264	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	273	278	first strand
Strand 2	B	284	289	anti-parallel
Strand 3	B	294	298	anti-parallel
Strand 4	B	304	307	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	5	7	first strand
Strand 2	S	21	23	anti-parallel
Strand 3	S	78	82	anti-parallel
Strand 4	S	69	73	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	10	11	first strand
Strand 2	S	115	118	parallel
Strand 3	S	92	94	anti-parallel
Strand 4	S	33	39	anti-parallel
Strand 5	S	45	51	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	10	11	first strand
Strand 2	S	115	118	parallel
Strand 3	S	92	94	anti-parallel
Strand 4	S	33	39	anti-parallel
Strand 5	S	97	99	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	146	147	first strand
Strand 2	S	243	245	parallel
Strand 3	S	226	229	anti-parallel
Strand 4	S	176	179	anti-parallel
Strand 5	S	186	191	anti-parallel
Strand 6	S	194	195	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	156	159	first strand
Strand 2	S	212	216	anti-parallel
Strand 3	S	203	207	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7W0O

Analysis of interatomic Contacts of Structural Units in PDB entry:
7W0O