Analysis of interatomic Contacts of Structural Units in PDB entry:
7W0W


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7W0W entry

There are 2 chains in PDB entry 7W0W (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 253LEU 383
B
 SER 245VAL 407
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 7W0W. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
253 275Right-handed alpha
Helix 2
AA2
A
281 283Right-handed 310
Helix 3
AA3
A
284 299Right-handed alpha
Helix 4
AA4
A
327 330Right-handed 310
Helix 5
AA5
A
331 340Right-handed alpha
Helix 6
AA6
A
379 383Right-handed alpha
Helix 7
AA7
B
246 275Right-handed alpha
Helix 8
AA8
B
276 281Right-handed alpha
Helix 9
AA9
B
284 299Right-handed alpha
Helix 10
AB1
B
327 330Right-handed 310
Helix 11
AB2
B
331 340Right-handed alpha
Helix 12
AB3
B
379 383Right-handed alpha
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There are 5 sheets in PDB entry 7W0W. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
314 317first strand
Strand 2
A
304 309anti-parallel
Strand 3
A
371 378anti-parallel
Strand 4
A
358 365anti-parallel
Strand 5
A
345 346anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
314 317first strand
Strand 2
A
304 309anti-parallel
Strand 3
A
371 378anti-parallel
Strand 4
A
358 365anti-parallel
Strand 5
A
350 351anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
314 317first strand
Strand 2
B
304 309anti-parallel
Strand 3
B
371 378anti-parallel
Strand 4
B
358 365anti-parallel
Strand 5
B
345 346anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
314 317first strand
Strand 2
B
304 309anti-parallel
Strand 3
B
371 378anti-parallel
Strand 4
B
358 365anti-parallel
Strand 5
B
350 351anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
401 402first strand
Strand 2
B
405 406anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il