Analysis of interatomic Contacts of Structural Units in PDB entry:
7W1K


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7W1K entry

There is 1 chain in PDB entry 7W1K (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1PRO 496
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 7W1K. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
33 38Right-handed 310
Helix 2
AA2
A
66 73Right-handed alpha
Helix 3
AA3
A
116 120Right-handed 310
Helix 4
AA4
A
121 127Right-handed alpha
Helix 5
AA5
A
138 144Right-handed alpha
Helix 6
AA6
A
152 169Right-handed alpha
Helix 7
AA7
A
170 172Right-handed 310
Helix 8
AA8
A
185 196Right-handed alpha
Helix 9
AA9
A
197 201Right-handed 310
Helix 10
AB1
A
220 235Right-handed alpha
Helix 11
AB2
A
239 244Right-handed alpha
Helix 12
AB3
A
247 264Right-handed alpha
Helix 13
AB4
A
267 277Right-handed alpha
Helix 14
AB5
A
296 303Right-handed alpha
Helix 15
AB6
A
320 325Right-handed alpha
Helix 16
AB7
A
329 333Right-handed 310
Helix 17
AB8
A
334 345Right-handed alpha
Helix 18
AB9
A
350 358Right-handed alpha
Helix 19
AC1
A
363 377Right-handed alpha
Helix 20
AC2
A
377 388Right-handed alpha
Helix 21
AC3
A
405 410Right-handed 310
Helix 22
AC4
A
418 424Right-handed alpha
Helix 23
AC5
A
425 428Right-handed 310
Helix 24
AC6
A
429 434Right-handed alpha
Helix 25
AC7
A
438 456Right-handed alpha
Helix 26
AC8
A
485 491Right-handed alpha
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There are 3 sheets in PDB entry 7W1K. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 6first strand
Strand 2
A
11 16anti-parallel
Strand 3
A
50 52parallel
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There are 12 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 6first strand
Strand 2
A
11 16anti-parallel
Strand 3
A
21 27anti-parallel
Strand 4
A
85 90anti-parallel
Strand 5
A
130 134anti-parallel
Strand 6
A
98 104parallel
Strand 7
A
174 184parallel
Strand 8
A
206 210parallel
Strand 9
A
310 316parallel
Strand 10
A
395 400parallel
Strand 11
A
469 473parallel
Strand 12
A
479 482anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
218 219first strand
Strand 2
A
287 288parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il