Analysis of interatomic Contacts of Structural Units in PDB entry:
7W1M

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7W1M entry

There are 8 chains in PDB entry 7W1M (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 2	ASP 1225
B	MET 1	GLY 1217
C	LYS 10	ILE 630
D	THR 86	LEU 1052
E	MET 1193	LEU 2628
F	A 6	A 112
G	T 7	T 113
H	VAL 223	CYS 577

There are162 helices in PDB entry 7W1M. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	38	50	Right-handed alpha
Helix 2	AA2	A	52	57	Right-handed 310
Helix 3	AA3	A	113	125	Right-handed alpha
Helix 4	AA4	A	139	145	Right-handed alpha
Helix 5	AA5	A	147	159	Right-handed alpha
Helix 6	AA6	A	161	163	Right-handed 310
Helix 7	AA7	A	164	201	Right-handed alpha
Helix 8	AA8	A	1028	1089	Right-handed alpha
Helix 9	AA9	A	1124	1128	Right-handed 310
Helix 10	AB1	A	1129	1148	Right-handed alpha
Helix 11	AB2	A	1163	1182	Right-handed alpha
Helix 12	AB3	A	1190	1196	Right-handed alpha
Helix 13	AB4	B	38	50	Right-handed alpha
Helix 14	AB5	B	51	56	Right-handed 310
Helix 15	AB6	B	57	63	Right-handed alpha
Helix 16	AB7	B	119	129	Right-handed alpha
Helix 17	AB8	B	145	150	Right-handed alpha
Helix 18	AB9	B	151	163	Right-handed alpha
Helix 19	AC1	B	167	256	Right-handed alpha
Helix 20	AC2	B	916	936	Right-handed alpha
Helix 21	AC3	B	938	947	Right-handed alpha
Helix 22	AC4	B	951	955	Right-handed 310
Helix 23	AC5	B	963	979	Right-handed alpha
Helix 24	AC6	B	985	1048	Right-handed alpha
Helix 25	AC7	B	1116	1135	Right-handed alpha
Helix 26	AC8	B	1150	1165	Right-handed alpha
Helix 27	AC9	B	1177	1182	Right-handed 310
Helix 28	AD1	B	1202	1211	Right-handed alpha
Helix 29	AD2	C	14	23	Right-handed alpha
Helix 30	AD3	C	28	35	Right-handed alpha
Helix 31	AD4	C	37	46	Right-handed alpha
Helix 32	AD5	C	52	86	Right-handed alpha
Helix 33	AD6	C	333	343	Right-handed alpha
Helix 34	AD7	C	344	348	Right-handed 310
Helix 35	AD8	C	357	365	Right-handed alpha
Helix 36	AD9	C	368	373	Right-handed alpha
Helix 37	AE1	C	382	391	Right-handed alpha
Helix 38	AE2	C	559	575	Right-handed alpha
Helix 39	AE3	C	581	585	Right-handed alpha
Helix 40	AE4	C	589	606	Right-handed alpha
Helix 41	AE5	D	87	93	Right-handed alpha
Helix 42	AE6	D	97	112	Right-handed alpha
Helix 43	AE7	D	112	128	Right-handed alpha
Helix 44	AE8	D	135	141	Right-handed alpha
Helix 45	AE9	D	143	154	Right-handed alpha
Helix 46	AF1	D	168	189	Right-handed alpha
Helix 47	AF2	D	192	196	Right-handed 310
Helix 48	AF3	D	198	212	Right-handed alpha
Helix 49	AF4	D	215	257	Right-handed alpha
Helix 50	AF5	D	260	300	Right-handed alpha
Helix 51	AF6	D	304	322	Right-handed alpha
Helix 52	AF7	D	328	339	Right-handed alpha
Helix 53	AF8	D	343	359	Right-handed alpha
Helix 54	AF9	D	364	374	Right-handed alpha
Helix 55	AG1	D	374	383	Right-handed alpha
Helix 56	AG2	D	386	404	Right-handed alpha
Helix 57	AG3	D	409	420	Right-handed alpha
Helix 58	AG4	D	424	439	Right-handed alpha
Helix 59	AG5	D	461	475	Right-handed alpha
Helix 60	AG6	D	481	488	Right-handed alpha
Helix 61	AG7	D	492	497	Right-handed alpha
Helix 62	AG8	D	498	505	Right-handed alpha
Helix 63	AG9	D	518	538	Right-handed alpha
Helix 64	AH1	D	553	582	Right-handed alpha
Helix 65	AH2	D	585	593	Right-handed alpha
Helix 66	AH3	D	594	600	Right-handed 310
Helix 67	AH4	D	601	608	Right-handed alpha
Helix 68	AH5	D	609	627	Right-handed alpha
Helix 69	AH6	D	629	644	Right-handed alpha
Helix 70	AH7	D	650	677	Right-handed alpha
Helix 71	AH8	D	684	704	Right-handed alpha
Helix 72	AH9	D	712	726	Right-handed alpha
Helix 73	AI1	D	730	751	Right-handed alpha
Helix 74	AI2	D	759	782	Right-handed alpha
Helix 75	AI3	D	784	802	Right-handed alpha
Helix 76	AI4	D	803	808	Right-handed 310
Helix 77	AI5	D	822	837	Right-handed alpha
Helix 78	AI6	D	857	878	Right-handed alpha
Helix 79	AI7	D	883	891	Right-handed alpha
Helix 80	AI8	D	896	915	Right-handed alpha
Helix 81	AI9	D	915	939	Right-handed alpha
Helix 82	AJ1	D	946	963	Right-handed alpha
Helix 83	AJ2	D	969	986	Right-handed alpha
Helix 84	AJ3	D	1002	1012	Right-handed alpha
Helix 85	AJ4	D	1017	1027	Right-handed alpha
Helix 86	AJ5	D	1031	1037	Right-handed alpha
Helix 87	AJ6	D	1042	1051	Right-handed alpha
Helix 88	AJ7	E	1199	1216	Right-handed alpha
Helix 89	AJ8	E	1234	1246	Right-handed alpha
Helix 90	AJ9	E	1248	1253	Right-handed alpha
Helix 91	AK1	E	1257	1276	Right-handed alpha
Helix 92	AK2	E	1294	1319	Right-handed alpha
Helix 93	AK3	E	1329	1353	Right-handed alpha
Helix 94	AK4	E	1381	1404	Right-handed alpha
Helix 95	AK5	E	1407	1420	Right-handed alpha
Helix 96	AK6	E	1421	1424	Right-handed 310
Helix 97	AK7	E	1427	1445	Right-handed alpha
Helix 98	AK8	E	1448	1459	Right-handed alpha
Helix 99	AK9	E	1460	1463	Right-handed 310
Helix 100	AL1	E	1489	1501	Right-handed alpha
Helix 101	AL2	E	1525	1551	Right-handed alpha
Helix 102	AL3	E	1558	1572	Right-handed alpha
Helix 103	AL4	E	1580	1597	Right-handed alpha
Helix 104	AL5	E	1602	1628	Right-handed alpha
Helix 105	AL6	E	1647	1666	Right-handed alpha
Helix 106	AL7	E	1669	1690	Right-handed alpha
Helix 107	AL8	E	1709	1729	Right-handed alpha
Helix 108	AL9	E	1749	1764	Right-handed alpha
Helix 109	AM1	E	1766	1768	Right-handed 310
Helix 110	AM2	E	1769	1780	Right-handed alpha
Helix 111	AM3	E	1785	1803	Right-handed alpha
Helix 112	AM4	E	1809	1821	Right-handed alpha
Helix 113	AM5	E	1824	1842	Right-handed alpha
Helix 114	AM6	E	1849	1856	Right-handed alpha
Helix 115	AM7	E	1862	1879	Right-handed alpha
Helix 116	AM8	E	1884	1892	Right-handed alpha
Helix 117	AM9	E	1893	1896	Right-handed 310
Helix 118	AN1	E	1899	1914	Right-handed alpha
Helix 119	AN2	E	1922	1940	Right-handed alpha
Helix 120	AN3	E	1945	1959	Right-handed alpha
Helix 121	AN4	E	1965	1986	Right-handed alpha
Helix 122	AN5	E	1999	2016	Right-handed alpha
Helix 123	AN6	E	2027	2032	Right-handed alpha
Helix 124	AN7	E	2037	2058	Right-handed alpha
Helix 125	AN8	E	2062	2079	Right-handed alpha
Helix 126	AN9	E	2081	2097	Right-handed alpha
Helix 127	AO1	E	2102	2127	Right-handed alpha
Helix 128	AO2	E	2131	2136	Right-handed alpha
Helix 129	AO3	E	2136	2154	Right-handed alpha
Helix 130	AO4	E	2168	2182	Right-handed alpha
Helix 131	AO5	E	2186	2203	Right-handed alpha
Helix 132	AO6	E	2204	2208	Right-handed 310
Helix 133	AO7	E	2209	2221	Right-handed alpha
Helix 134	AO8	E	2227	2254	Right-handed alpha
Helix 135	AO9	E	2258	2262	Right-handed 310
Helix 136	AP1	E	2269	2290	Right-handed alpha
Helix 137	AP2	E	2294	2312	Right-handed alpha
Helix 138	AP3	E	2319	2326	Right-handed alpha
Helix 139	AP4	E	2327	2329	Right-handed 310
Helix 140	AP5	E	2331	2347	Right-handed alpha
Helix 141	AP6	E	2351	2356	Right-handed alpha
Helix 142	AP7	E	2357	2372	Right-handed alpha
Helix 143	AP8	E	2392	2400	Right-handed alpha
Helix 144	AP9	E	2402	2417	Right-handed alpha
Helix 145	AQ1	E	2424	2438	Right-handed alpha
Helix 146	AQ2	E	2443	2471	Right-handed alpha
Helix 147	AQ3	E	2534	2558	Right-handed alpha
Helix 148	AQ4	E	2560	2567	Right-handed alpha
Helix 149	AQ5	E	2588	2601	Right-handed alpha
Helix 150	AQ6	E	2607	2627	Right-handed alpha
Helix 151	AQ7	H	223	227	Right-handed 310
Helix 152	AQ8	H	277	290	Right-handed alpha
Helix 153	AQ9	H	305	317	Right-handed alpha
Helix 154	AR1	H	333	345	Right-handed alpha
Helix 155	AR2	H	362	375	Right-handed alpha
Helix 156	AR3	H	390	403	Right-handed alpha
Helix 157	AR4	H	418	430	Right-handed alpha
Helix 158	AR5	H	448	460	Right-handed alpha
Helix 159	AR6	H	479	490	Right-handed alpha
Helix 160	AR7	H	506	518	Right-handed alpha
Helix 161	AR8	H	536	547	Right-handed alpha
Helix 162	AR9	H	566	576	Right-handed alpha

There are 16 sheets in PDB entry 7W1M. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	18	20	first strand
Strand 2	A	3	10	anti-parallel
Strand 3	A	78	86	anti-parallel
Strand 4	A	90	99	anti-parallel
Strand 5	A	102	107	anti-parallel
Strand 6	A	111	112	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1152	1156	first strand
Strand 2	A	1183	1187	parallel
Strand 3	A	29	31	parallel
Strand 4	A	1199	1206	parallel
Strand 5	A	1212	1219	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1096	1100	first strand
Strand 2	A	1111	1115	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2	9	first strand
Strand 2	B	76	83	anti-parallel
Strand 3	B	95	102	anti-parallel
Strand 4	B	107	111	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1139	1143	first strand
Strand 2	B	1169	1173	parallel
Strand 3	B	27	31	parallel
Strand 4	B	1185	1192	parallel
Strand 5	B	1195	1201	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1051	1057	first strand
Strand 2	B	1096	1102	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	579	580	first strand
Strand 2	C	621	624	anti-parallel
Strand 3	C	609	612	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	1471	1473	first strand
Strand 2	E	1487	1488	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	266	267	first strand
Strand 2	H	274	275	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	294	295	first strand
Strand 2	H	302	303	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	322	323	first strand
Strand 2	H	330	331	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	351	352	first strand
Strand 2	H	359	360	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	437	438	first strand
Strand 2	H	445	446	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	462	468	first strand
Strand 2	H	475	478	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	495	496	first strand
Strand 2	H	503	504	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	523	524	first strand
Strand 2	H	531	532	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7W1M

Analysis of interatomic Contacts of Structural Units in PDB entry:
7W1M