Analysis of interatomic Contacts of Structural Units in PDB entry:
7W1N


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7W1N entry

There is 1 chain in PDB entry 7W1N (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 36GLN 293
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 10 helices in PDB entry 7W1N. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
47 52Right-handed 310
Helix 2
AA2
A
98 101Right-handed 310
Helix 3
AA3
A
102 112Right-handed alpha
Helix 4
AA4
A
127 145Right-handed alpha
Helix 5
AA5
A
147 152Right-handed alpha
Helix 6
AA6
A
165 178Right-handed alpha
Helix 7
AA7
A
218 226Right-handed alpha
Helix 8
AA8
A
243 247Right-handed 310
Helix 9
AA9
A
249 265Right-handed alpha
Helix 10
AB1
A
267 274Right-handed 310
Back to top of page

There are 2 sheets in PDB entry 7W1N. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
57 63first strand
Strand 2
A
74 80anti-parallel
Strand 3
A
115 119anti-parallel
Strand 4
A
86 92parallel
Strand 5
A
154 164parallel
Strand 6
A
183 187parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
202 207first strand
Strand 2
A
232 237parallel
Strand 3
A
282 287anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il