Analysis of interatomic Contacts of Structural Units in PDB entry:
7W2J

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7W2J entry

There are 6 chains in PDB entry 7W2J (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 6	LYS 542
B	SER 50	SER 172
C	ILE 40	VAL 471
D	LEU 6	LYS 542
E	SER 50	SER 172
F	ILE 40	VAL 471

There are 86 helices in PDB entry 7W2J. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	16	30	Right-handed alpha
Helix 2	AA2	A	43	54	Right-handed alpha
Helix 3	AA3	A	55	61	Right-handed alpha
Helix 4	AA4	A	92	97	Right-handed 310
Helix 5	AA5	A	105	110	Right-handed 310
Helix 6	AA6	A	120	123	Right-handed 310
Helix 7	AA7	A	124	130	Right-handed alpha
Helix 8	AA8	A	138	154	Right-handed alpha
Helix 9	AA9	A	181	195	Right-handed alpha
Helix 10	AB1	A	233	245	Right-handed alpha
Helix 11	AB2	A	292	301	Right-handed alpha
Helix 12	AB3	A	350	353	Right-handed 310
Helix 13	AB4	A	355	360	Right-handed 310
Helix 14	AB5	A	373	384	Right-handed alpha
Helix 15	AB6	A	388	401	Right-handed alpha
Helix 16	AB7	A	440	462	Right-handed alpha
Helix 17	AB8	A	488	492	Right-handed 310
Helix 18	AB9	A	510	514	Right-handed 310
Helix 19	AC1	A	522	531	Right-handed alpha
Helix 20	AC2	A	531	541	Right-handed alpha
Helix 21	AC3	B	51	56	Right-handed alpha
Helix 22	AC4	B	74	83	Right-handed alpha
Helix 23	AC5	B	85	93	Right-handed alpha
Helix 24	AC6	B	121	124	Right-handed 310
Helix 25	AC7	B	125	130	Right-handed alpha
Helix 26	AC8	C	41	51	Right-handed alpha
Helix 27	AC9	C	95	106	Right-handed alpha
Helix 28	AD1	C	119	124	Right-handed alpha
Helix 29	AD2	C	127	141	Right-handed alpha
Helix 30	AD3	C	160	162	Right-handed 310
Helix 31	AD4	C	163	172	Right-handed alpha
Helix 32	AD5	C	185	196	Right-handed alpha
Helix 33	AD6	C	201	206	Right-handed alpha
Helix 34	AD7	C	245	256	Right-handed alpha
Helix 35	AD8	C	264	272	Right-handed alpha
Helix 36	AD9	C	274	278	Right-handed 310
Helix 37	AE1	C	279	293	Right-handed alpha
Helix 38	AE2	C	336	341	Right-handed alpha
Helix 39	AE3	C	373	383	Right-handed alpha
Helix 40	AE4	C	408	423	Right-handed alpha
Helix 41	AE5	C	433	441	Right-handed alpha
Helix 42	AE6	C	447	451	Right-handed 310
Helix 43	AE7	C	452	471	Right-handed alpha
Helix 44	AE8	D	16	30	Right-handed alpha
Helix 45	AE9	D	43	54	Right-handed alpha
Helix 46	AF1	D	55	61	Right-handed alpha
Helix 47	AF2	D	92	97	Right-handed 310
Helix 48	AF3	D	105	110	Right-handed 310
Helix 49	AF4	D	120	123	Right-handed 310
Helix 50	AF5	D	124	130	Right-handed alpha
Helix 51	AF6	D	138	154	Right-handed alpha
Helix 52	AF7	D	181	195	Right-handed alpha
Helix 53	AF8	D	233	245	Right-handed alpha
Helix 54	AF9	D	292	301	Right-handed alpha
Helix 55	AG1	D	350	353	Right-handed 310
Helix 56	AG2	D	355	360	Right-handed 310
Helix 57	AG3	D	373	384	Right-handed alpha
Helix 58	AG4	D	388	401	Right-handed alpha
Helix 59	AG5	D	440	462	Right-handed alpha
Helix 60	AG6	D	488	492	Right-handed 310
Helix 61	AG7	D	510	514	Right-handed 310
Helix 62	AG8	D	522	531	Right-handed alpha
Helix 63	AG9	D	531	541	Right-handed alpha
Helix 64	AH1	E	51	56	Right-handed alpha
Helix 65	AH2	E	74	83	Right-handed alpha
Helix 66	AH3	E	85	93	Right-handed alpha
Helix 67	AH4	E	121	124	Right-handed 310
Helix 68	AH5	E	125	130	Right-handed alpha
Helix 69	AH6	F	41	51	Right-handed alpha
Helix 70	AH7	F	95	106	Right-handed alpha
Helix 71	AH8	F	119	124	Right-handed alpha
Helix 72	AH9	F	127	141	Right-handed alpha
Helix 73	AI1	F	160	162	Right-handed 310
Helix 74	AI2	F	163	172	Right-handed alpha
Helix 75	AI3	F	185	196	Right-handed alpha
Helix 76	AI4	F	201	206	Right-handed alpha
Helix 77	AI5	F	245	256	Right-handed alpha
Helix 78	AI6	F	264	272	Right-handed alpha
Helix 79	AI7	F	274	278	Right-handed 310
Helix 80	AI8	F	279	293	Right-handed alpha
Helix 81	AI9	F	336	341	Right-handed alpha
Helix 82	AJ1	F	373	383	Right-handed alpha
Helix 83	AJ2	F	408	423	Right-handed alpha
Helix 84	AJ3	F	433	441	Right-handed alpha
Helix 85	AJ4	F	447	451	Right-handed 310
Helix 86	AJ5	F	452	471	Right-handed alpha

There are 16 sheets in PDB entry 7W2J. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	247	250	first strand
Strand 2	A	33	37	parallel
Strand 3	A	7	13	parallel
Strand 4	A	277	287	parallel
Strand 5	A	265	271	anti-parallel
Strand 6	A	253	259	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	247	250	first strand
Strand 2	A	33	37	parallel
Strand 3	A	7	13	parallel
Strand 4	A	277	287	parallel
Strand 5	A	506	507	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	87	89	first strand
Strand 2	A	435	437	parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	327	332	first strand
Strand 2	A	402	408	anti-parallel
Strand 3	A	365	367	anti-parallel
Strand 4	A	348	349	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	70	72	first strand
Strand 2	C	77	79	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	224	225	first strand
Strand 2	C	228	229	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	257	258	first strand
Strand 2	C	261	262	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	385	387	first strand
Strand 2	C	392	394	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	247	250	first strand
Strand 2	D	33	37	parallel
Strand 3	D	7	13	parallel
Strand 4	D	277	287	parallel
Strand 5	D	265	271	anti-parallel
Strand 6	D	253	259	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	247	250	first strand
Strand 2	D	33	37	parallel
Strand 3	D	7	13	parallel
Strand 4	D	277	287	parallel
Strand 5	D	506	507	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	87	89	first strand
Strand 2	D	435	437	parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	327	332	first strand
Strand 2	D	402	408	anti-parallel
Strand 3	D	365	367	anti-parallel
Strand 4	D	348	349	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	70	72	first strand
Strand 2	F	77	79	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	224	225	first strand
Strand 2	F	228	229	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	257	258	first strand
Strand 2	F	261	262	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	385	387	first strand
Strand 2	F	392	394	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7W2J

Analysis of interatomic Contacts of Structural Units in PDB entry:
7W2J