Analysis of interatomic Contacts of Structural Units in PDB entry:
7W42


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7W42 entry

There are 2 chains in PDB entry 7W42 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 4GLY 404
B
 ASN 3GLY 404
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 37 helices in PDB entry 7W42. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
13 18Right-handed 310
Helix 2
AA2
A
21 41Right-handed alpha
Helix 3
AA3
A
54 66Right-handed alpha
Helix 4
AA4
A
138 159Right-handed alpha
Helix 5
AA5
A
183 187Right-handed 310
Helix 6
AA6
A
190 206Right-handed alpha
Helix 7
AA7
A
209 216Right-handed alpha
Helix 8
AA8
A
232 242Right-handed alpha
Helix 9
AA9
A
258 272Right-handed alpha
Helix 10
AB1
A
282 285Right-handed 310
Helix 11
AB2
A
286 299Right-handed alpha
Helix 12
AB3
A
314 319Right-handed alpha
Helix 13
AB4
A
339 351Right-handed alpha
Helix 14
AB5
A
352 355Right-handed 310
Helix 15
AB6
A
357 368Right-handed alpha
Helix 16
AB7
A
372 391Right-handed alpha
Helix 17
AB8
A
394 404Right-handed alpha
Helix 18
AB9
B
13 18Right-handed 310
Helix 19
AC1
B
21 41Right-handed alpha
Helix 20
AC2
B
54 66Right-handed alpha
Helix 21
AC3
B
138 148Right-handed alpha
Helix 22
AC4
B
148 159Right-handed alpha
Helix 23
AC5
B
183 187Right-handed 310
Helix 24
AC6
B
190 207Right-handed alpha
Helix 25
AC7
B
209 215Right-handed alpha
Helix 26
AC8
B
232 244Right-handed alpha
Helix 27
AC9
B
258 273Right-handed alpha
Helix 28
AD1
B
281 285Right-handed 310
Helix 29
AD2
B
286 288Right-handed 310
Helix 30
AD3
B
289 299Right-handed alpha
Helix 31
AD4
B
314 318Right-handed 310
Helix 32
AD5
B
319 323Right-handed 310
Helix 33
AD6
B
339 351Right-handed alpha
Helix 34
AD7
B
352 355Right-handed 310
Helix 35
AD8
B
357 368Right-handed alpha
Helix 36
AD9
B
372 391Right-handed alpha
Helix 37
AE1
B
394 404Right-handed alpha
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There are 6 sheets in PDB entry 7W42. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
45 48first strand
Strand 2
A
128 136anti-parallel
Strand 3
A
115 123anti-parallel
Strand 4
A
106 110anti-parallel
Strand 5
A
72 76anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
84 86first strand
Strand 2
A
99 101anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
171 177first strand
Strand 2
A
160 166anti-parallel
Strand 3
A
248 252parallel
Strand 4
A
275 280parallel
Strand 5
A
306 312parallel
Strand 6
A
221 226parallel
Strand 7
A
331 334parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
45 48first strand
Strand 2
B
128 136anti-parallel
Strand 3
B
115 123anti-parallel
Strand 4
B
106 110anti-parallel
Strand 5
B
72 76anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
84 86first strand
Strand 2
B
99 101anti-parallel
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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
171 176first strand
Strand 2
B
161 166anti-parallel
Strand 3
B
248 252parallel
Strand 4
B
275 279parallel
Strand 5
B
306 312parallel
Strand 6
B
221 226parallel
Strand 7
B
331 334parallel
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