Analysis of interatomic Contacts of Structural Units in PDB entry:
7W54


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7W54 entry

There are 6 chains in PDB entry 7W54 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 2ILE 520
B
 ALA 2ILE 520
C
 MET 1GLY 75
D
 MET 1LEU 73
E
 MET 1GLY 75
F
 MET 1VAL 5
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 71 helices in PDB entry 7W54. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
12 28Right-handed alpha
Helix 2
AA2
A
33 36Right-handed 310
Helix 3
AA3
A
37 51Right-handed alpha
Helix 4
AA4
A
58 69Right-handed alpha
Helix 5
AA5
A
71 89Right-handed alpha
Helix 6
AA6
A
93 109Right-handed alpha
Helix 7
AA7
A
109 115Right-handed alpha
Helix 8
AA8
A
118 122Right-handed 310
Helix 9
AA9
A
133 139Right-handed alpha
Helix 10
AB1
A
144 156Right-handed alpha
Helix 11
AB2
A
157 159Right-handed 310
Helix 12
AB3
A
164 176Right-handed alpha
Helix 13
AB4
A
176 190Right-handed alpha
Helix 14
AB5
A
192 196Right-handed 310
Helix 15
AB6
A
203 210Right-handed alpha
Helix 16
AB7
A
243 251Right-handed alpha
Helix 17
AB8
A
261 268Right-handed alpha
Helix 18
AB9
A
303 322Right-handed alpha
Helix 19
AC1
A
325 335Right-handed alpha
Helix 20
AC2
A
336 339Right-handed 310
Helix 21
AC3
A
341 347Right-handed alpha
Helix 22
AC4
A
354 381Right-handed alpha
Helix 23
AC5
A
388 393Right-handed alpha
Helix 24
AC6
A
394 402Right-handed alpha
Helix 25
AC7
A
407 411Right-handed 310
Helix 26
AC8
A
421 430Right-handed alpha
Helix 27
AC9
A
441 455Right-handed alpha
Helix 28
AD1
A
459 463Right-handed 310
Helix 29
AD2
A
473 480Right-handed alpha
Helix 30
AD3
A
481 483Right-handed 310
Helix 31
AD4
A
490 502Right-handed alpha
Helix 32
AD5
B
12 29Right-handed alpha
Helix 33
AD6
B
31 36Right-handed 310
Helix 34
AD7
B
37 51Right-handed alpha
Helix 35
AD8
B
58 69Right-handed alpha
Helix 36
AD9
B
71 89Right-handed alpha
Helix 37
AE1
B
93 108Right-handed alpha
Helix 38
AE2
B
109 115Right-handed alpha
Helix 39
AE3
B
118 122Right-handed 310
Helix 40
AE4
B
133 139Right-handed alpha
Helix 41
AE5
B
144 156Right-handed alpha
Helix 42
AE6
B
157 159Right-handed 310
Helix 43
AE7
B
164 176Right-handed alpha
Helix 44
AE8
B
176 189Right-handed alpha
Helix 45
AE9
B
192 196Right-handed 310
Helix 46
AF1
B
199 202Right-handed 310
Helix 47
AF2
B
203 210Right-handed alpha
Helix 48
AF3
B
246 251Right-handed alpha
Helix 49
AF4
B
261 268Right-handed alpha
Helix 50
AF5
B
303 322Right-handed alpha
Helix 51
AF6
B
325 335Right-handed alpha
Helix 52
AF7
B
336 339Right-handed 310
Helix 53
AF8
B
341 348Right-handed alpha
Helix 54
AF9
B
354 381Right-handed alpha
Helix 55
AG1
B
390 393Right-handed 310
Helix 56
AG2
B
394 406Right-handed alpha
Helix 57
AG3
B
421 430Right-handed alpha
Helix 58
AG4
B
441 455Right-handed alpha
Helix 59
AG5
B
459 463Right-handed 310
Helix 60
AG6
B
473 480Right-handed alpha
Helix 61
AG7
B
481 484Right-handed 310
Helix 62
AG8
B
490 501Right-handed alpha
Helix 63
AG9
C
22 34Right-handed alpha
Helix 64
AH1
C
37 39Right-handed 310
Helix 65
AH2
C
56 60Right-handed 310
Helix 66
AH3
D
22 35Right-handed alpha
Helix 67
AH4
D
37 39Right-handed 310
Helix 68
AH5
E
22 35Right-handed alpha
Helix 69
AH6
E
37 39Right-handed 310
Helix 70
AH7
F
22 35Right-handed alpha
Helix 71
AH8
F
37 41Right-handed 310
Back to top of page

There are 9 sheets in PDB entry 7W54. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 5first strand
Strand 2
A
238 242anti-parallel
Strand 3
A
228 233anti-parallel
Strand 4
A
213 216parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
198 199first strand
Strand 2
C
74 75anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
504 508first strand
Strand 2
A
287 293parallel
Strand 3
B
514 518parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
514 518first strand
Strand 2
B
287 293parallel
Strand 3
B
504 508parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
3 5first strand
Strand 2
B
238 242anti-parallel
Strand 3
B
227 233anti-parallel
Strand 4
B
212 216parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
12 16first strand
Strand 2
C
2 7anti-parallel
Strand 3
C
66 71parallel
Strand 4
C
41 45anti-parallel
Strand 5
C
48 49anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
12 16first strand
Strand 2
D
2 6anti-parallel
Strand 3
D
66 71parallel
Strand 4
D
41 44anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
12 16first strand
Strand 2
E
2 6anti-parallel
Strand 3
E
66 71parallel
Strand 4
E
41 45anti-parallel
Strand 5
E
48 49anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
12 16first strand
Strand 2
F
2 6anti-parallel
Strand 3
F
66 70parallel
Strand 4
F
42 45anti-parallel
Strand 5
F
48 50anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il