Analysis of interatomic Contacts of Structural Units in PDB entry:
7W56

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7W56 entry

There are 6 chains in PDB entry 7W56 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 5	VAL 361
B	GLU 8	SER 348
C	PHE 2	GLN 10
E	VAL 1	LEU 247
G	THR 5	ARG 61
R	LEU 59	PHE 367

There are 32 helices in PDB entry 7W56. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	6	33	Right-handed alpha
Helix 2	AA2	A	45	52	Right-handed alpha
Helix 3	AA3	A	210	218	Right-handed 310
Helix 4	AA4	A	231	245	Right-handed alpha
Helix 5	AA5	A	260	271	Right-handed alpha
Helix 6	AA6	A	274	278	Right-handed 310
Helix 7	AA7	A	279	284	Right-handed 310
Helix 8	AA8	A	298	318	Right-handed alpha
Helix 9	AA9	A	337	358	Right-handed alpha
Helix 10	AB1	B	9	31	Right-handed alpha
Helix 11	AB2	B	34	40	Right-handed alpha
Helix 12	AB3	E	27	31	Right-handed 310
Helix 13	AB4	E	52	55	Right-handed 310
Helix 14	AB5	E	73	75	Right-handed 310
Helix 15	AB6	E	86	90	Right-handed 310
Helix 16	AB7	E	220	224	Right-handed 310
Helix 17	AB8	G	6	23	Right-handed alpha
Helix 18	AB9	G	28	43	Right-handed alpha
Helix 19	AC1	G	44	47	Right-handed 310
Helix 20	AC2	R	60	88	Right-handed alpha
Helix 21	AC3	R	89	92	Right-handed 310
Helix 22	AC4	R	93	123	Right-handed alpha
Helix 23	AC5	R	129	160	Right-handed alpha
Helix 24	AC6	R	161	163	Right-handed 310
Helix 25	AC7	R	164	165	Right-handed 310
Helix 26	AC8	R	166	172	Right-handed alpha
Helix 27	AC9	R	174	198	Right-handed alpha
Helix 28	AD1	R	224	240	Right-handed alpha
Helix 29	AD2	R	240	260	Right-handed alpha
Helix 30	AD3	R	293	323	Right-handed alpha
Helix 31	AD4	R	330	357	Right-handed alpha
Helix 32	AD5	R	360	365	Right-handed alpha

There are 13 sheets in PDB entry 7W56. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	184	191	first strand
Strand 2	A	194	201	anti-parallel
Strand 3	A	34	39	parallel
Strand 4	A	220	226	parallel
Strand 5	A	253	259	parallel
Strand 6	A	326	330	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	51	56	first strand
Strand 2	B	341	345	anti-parallel
Strand 3	B	332	336	anti-parallel
Strand 4	B	320	325	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	63	68	first strand
Strand 2	B	74	79	anti-parallel
Strand 3	B	83	88	anti-parallel
Strand 4	B	94	99	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	105	110	first strand
Strand 2	B	116	121	anti-parallel
Strand 3	B	126	130	anti-parallel
Strand 4	B	139	144	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	151	156	first strand
Strand 2	B	161	166	anti-parallel
Strand 3	B	171	175	anti-parallel
Strand 4	B	180	185	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	192	197	first strand
Strand 2	B	203	208	anti-parallel
Strand 3	B	213	217	anti-parallel
Strand 4	B	223	227	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	234	239	first strand
Strand 2	B	245	250	anti-parallel
Strand 3	B	255	259	anti-parallel
Strand 4	B	264	269	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	280	283	first strand
Strand 2	B	289	293	anti-parallel
Strand 3	B	299	303	anti-parallel
Strand 4	B	309	313	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	2	6	first strand
Strand 2	E	17	24	anti-parallel
Strand 3	E	77	82	anti-parallel
Strand 4	E	67	72	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	9	11	first strand
Strand 2	E	114	118	parallel
Strand 3	E	91	98	anti-parallel
Strand 4	E	32	38	anti-parallel
Strand 5	E	44	50	anti-parallel
Strand 6	E	57	59	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	9	11	first strand
Strand 2	E	114	118	parallel
Strand 3	E	91	98	anti-parallel
Strand 4	E	109	110	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	140	142	first strand
Strand 2	E	155	161	anti-parallel
Strand 3	E	211	216	anti-parallel
Strand 4	E	203	207	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	146	148	first strand
Strand 2	E	243	246	parallel
Strand 3	E	225	231	anti-parallel
Strand 4	E	174	179	anti-parallel
Strand 5	E	186	191	anti-parallel
Strand 6	E	194	195	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7W56

Analysis of interatomic Contacts of Structural Units in PDB entry:
7W56