Analysis of interatomic Contacts of Structural Units in PDB entry:
7W5C


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7W5C entry

There are 2 chains in PDB entry 7W5C (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 18PRO 372
Q
 ILE 187ASN 199
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 17 helices in PDB entry 7W5C. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
22 24Right-handed 310
Helix 2
AA2
A
80 97Right-handed alpha
Helix 3
AA3
A
113 117Right-handed 310
Helix 4
AA4
A
131 137Right-handed alpha
Helix 5
AA5
A
142 163Right-handed alpha
Helix 6
AA6
A
171 173Right-handed 310
Helix 7
AA7
A
211 216Right-handed alpha
Helix 8
AA8
A
223 240Right-handed alpha
Helix 9
AA9
A
248 261Right-handed alpha
Helix 10
AB1
A
273 283Right-handed alpha
Helix 11
AB2
A
290 295Right-handed alpha
Helix 12
AB3
A
299 310Right-handed alpha
Helix 13
AB4
A
313 317Right-handed 310
Helix 14
AB5
A
319 325Right-handed alpha
Helix 15
AB6
A
326 330Right-handed 310
Helix 16
AB7
A
334 338Right-handed 310
Helix 17
AB8
A
355 371Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 7W5C. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
19 21first strand
Strand 2
A
26 31anti-parallel
Strand 3
A
34 39anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
42 51first strand
Strand 2
A
55 62anti-parallel
Strand 3
A
67 74anti-parallel
Strand 4
A
120 125anti-parallel
Strand 5
A
105 108anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
129 130first strand
Strand 2
A
175 177anti-parallel
Strand 3
A
183 185anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
165 166first strand
Strand 2
A
192 193anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il