Analysis of interatomic Contacts of Structural Units in PDB entry:
7W5O


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7W5O entry

There are 4 chains in PDB entry 7W5O (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 11ASP 124
A
 ILE 126SER 360
B
 GLU 12ASP 124
B
 ILE 126GLY 357
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 36 helices in PDB entry 7W5O. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
61 78Right-handed alpha
Helix 2
AA2
A
112 117Right-handed alpha
Helix 3
AA3
A
122 143Right-handed alpha
Helix 4
AA4
A
151 153Right-handed 310
Helix 5
AA5
A
182 186Right-handed 310
Helix 6
AA6
A
190 194Right-handed 310
Helix 7
AA7
A
195 202Right-handed alpha
Helix 8
AA8
A
207 224Right-handed alpha
Helix 9
AA9
A
232 245Right-handed alpha
Helix 10
AB1
A
249 253Right-handed 310
Helix 11
AB2
A
274 279Right-handed alpha
Helix 12
AB3
A
283 294Right-handed alpha
Helix 13
AB4
A
297 301Right-handed 310
Helix 14
AB5
A
303 309Right-handed alpha
Helix 15
AB6
A
310 314Right-handed 310
Helix 16
AB7
A
318 322Right-handed 310
Helix 17
AB8
A
339 351Right-handed alpha
Helix 18
AB9
A
352 355Right-handed 310
Helix 19
AC1
B
63 78Right-handed alpha
Helix 20
AC2
B
94 98Right-handed 310
Helix 21
AC3
B
112 117Right-handed alpha
Helix 22
AC4
B
122 143Right-handed alpha
Helix 23
AC5
B
151 153Right-handed 310
Helix 24
AC6
B
190 194Right-handed 310
Helix 25
AC7
B
207 224Right-handed alpha
Helix 26
AC8
B
232 245Right-handed alpha
Helix 27
AC9
B
250 254Right-handed 310
Helix 28
AD1
B
257 266Right-handed alpha
Helix 29
AD2
B
274 279Right-handed alpha
Helix 30
AD3
B
283 294Right-handed alpha
Helix 31
AD4
B
297 301Right-handed 310
Helix 32
AD5
B
303 309Right-handed alpha
Helix 33
AD6
B
310 314Right-handed 310
Helix 34
AD7
B
318 322Right-handed 310
Helix 35
AD8
B
339 351Right-handed alpha
Helix 36
AD9
B
352 355Right-handed 310
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There are 6 sheets in PDB entry 7W5O. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
25 33first strand
Strand 2
A
38 44anti-parallel
Strand 3
A
49 56anti-parallel
Strand 4
A
101 106anti-parallel
Strand 5
A
88 90anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
110 111first strand
Strand 2
A
155 159anti-parallel
Strand 3
A
162 165anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
145 146first strand
Strand 2
A
172 173anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
32 33first strand
Strand 2
B
37 41anti-parallel
Strand 3
B
52 56anti-parallel
Strand 4
B
101 105anti-parallel
Strand 5
B
88 90anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
110 111first strand
Strand 2
B
155 157anti-parallel
Strand 3
B
163 165anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
145 146first strand
Strand 2
B
172 173anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il