Analysis of interatomic Contacts of Structural Units in PDB entry:
7W5R


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7W5R entry

There are 8 chains in PDB entry 7W5R (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLU 168
E
 MET 1GLU 168
H
 LEU 65ALA 69
I
 GLU 3GLU 168
M
 MET 1GLU 168
Q
 THR 2GLU 168
U
 THR 2GLU 168
X
 LEU 65ALA 69
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 33 helices in PDB entry 7W5R. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
15 25Right-handed alpha
Helix 2
AA2
A
87 92Right-handed alpha
Helix 3
AA3
A
92 105Right-handed alpha
Helix 4
AA4
A
128 133Right-handed alpha
Helix 5
AA5
A
134 137Right-handed 310
Helix 6
AA6
A
151 168Right-handed alpha
Helix 7
AA7
E
15 24Right-handed alpha
Helix 8
AA8
E
87 92Right-handed alpha
Helix 9
AA9
E
92 105Right-handed alpha
Helix 10
AB1
E
128 136Right-handed alpha
Helix 11
AB2
E
151 168Right-handed alpha
Helix 12
AB3
I
15 23Right-handed alpha
Helix 13
AB4
I
87 92Right-handed alpha
Helix 14
AB5
I
92 105Right-handed alpha
Helix 15
AB6
I
128 136Right-handed alpha
Helix 16
AB7
I
151 168Right-handed alpha
Helix 17
AB8
M
15 24Right-handed alpha
Helix 18
AB9
M
68 72Right-handed alpha
Helix 19
AC1
M
87 92Right-handed alpha
Helix 20
AC2
M
92 104Right-handed alpha
Helix 21
AC3
M
128 136Right-handed alpha
Helix 22
AC4
M
151 168Right-handed alpha
Helix 23
AC5
Q
15 26Right-handed alpha
Helix 24
AC6
Q
87 92Right-handed alpha
Helix 25
AC7
Q
93 105Right-handed alpha
Helix 26
AC8
Q
128 136Right-handed alpha
Helix 27
AC9
Q
151 168Right-handed alpha
Helix 28
AD1
U
15 24Right-handed alpha
Helix 29
AD2
U
70 75Right-handed alpha
Helix 30
AD3
U
87 92Right-handed alpha
Helix 31
AD4
U
93 105Right-handed alpha
Helix 32
AD5
U
128 136Right-handed alpha
Helix 33
AD6
U
151 168Right-handed alpha
Back to top of page

There are 9 sheets in PDB entry 7W5R. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
41 44first strand
Strand 2
A
51 54anti-parallel
Strand 3
A
3 9parallel
Strand 4
A
77 83parallel
Strand 5
A
114 116parallel
Strand 6
A
142 143parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
41 44first strand
Strand 2
E
51 54anti-parallel
Strand 3
E
3 7parallel
Strand 4
E
77 78parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
81 83first strand
Strand 2
E
113 116parallel
Strand 3
E
141 142parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
43 44first strand
Strand 2
I
51 54anti-parallel
Strand 3
I
4 7parallel
Strand 4
I
77 78parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
81 83first strand
Strand 2
I
113 116parallel
Strand 3
I
141 142parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
M
43 44first strand
Strand 2
M
51 54anti-parallel
Strand 3
M
3 10parallel
Strand 4
M
77 83parallel
Strand 5
M
113 116parallel
Strand 6
M
141 142parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
Q
43 44first strand
Strand 2
Q
51 54anti-parallel
Strand 3
Q
4 9parallel
Strand 4
Q
77 83parallel
Strand 5
Q
113 116parallel
Strand 6
Q
141 142parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
U
6 9first strand
Strand 2
U
77 83parallel
Strand 3
U
113 116parallel
Strand 4
U
141 143parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
U
43 44first strand
Strand 2
U
51 52anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il