Analysis of interatomic Contacts of Structural Units in PDB entry:
7W63

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7W63 entry

There are 3 chains in PDB entry 7W63 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 34	ASN 423
B	GLU 29	ASN 423
C	GLU 29	ASN 423

There are 22 helices in PDB entry 7W63. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	35	52	Right-handed alpha
Helix 2	AA2	A	61	65	Right-handed 310
Helix 3	AA3	A	77	81	Right-handed 310
Helix 4	AA4	A	153	155	Right-handed 310
Helix 5	AA5	A	156	171	Right-handed alpha
Helix 6	AA6	A	198	204	Right-handed alpha
Helix 7	AA7	A	204	214	Right-handed alpha
Helix 8	AA8	B	34	52	Right-handed alpha
Helix 9	AA9	B	62	65	Right-handed 310
Helix 10	AB1	B	77	81	Right-handed 310
Helix 11	AB2	B	153	155	Right-handed 310
Helix 12	AB3	B	156	171	Right-handed alpha
Helix 13	AB4	B	198	203	Right-handed alpha
Helix 14	AB5	B	204	212	Right-handed alpha
Helix 15	AB6	B	213	215	Right-handed 310
Helix 16	AB7	C	31	52	Right-handed alpha
Helix 17	AB8	C	62	65	Right-handed 310
Helix 18	AB9	C	77	81	Right-handed 310
Helix 19	AC1	C	153	155	Right-handed 310
Helix 20	AC2	C	156	171	Right-handed alpha
Helix 21	AC3	C	198	204	Right-handed alpha
Helix 22	AC4	C	204	214	Right-handed alpha

There are 18 sheets in PDB entry 7W63. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	70	74	first strand
Strand 2	A	116	127	anti-parallel
Strand 3	A	138	149	anti-parallel
Strand 4	A	220	225	anti-parallel
Strand 5	A	179	185	anti-parallel
Strand 6	A	190	197	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	173	175	first strand
Strand 2	A	227	229	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	249	250	first strand
Strand 2	A	261	267	anti-parallel
Strand 3	A	272	276	anti-parallel
Strand 4	C	282	284	parallel
Strand 5	B	287	292	parallel
Strand 6	B	295	297	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	249	253	first strand
Strand 2	B	256	267	anti-parallel
Strand 3	B	272	276	anti-parallel
Strand 4	A	282	284	parallel
Strand 5	C	287	292	parallel
Strand 6	C	295	297	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	295	297	first strand
Strand 2	A	287	292	anti-parallel
Strand 3	B	282	284	parallel
Strand 4	C	272	276	parallel
Strand 5	C	256	267	anti-parallel
Strand 6	C	249	253	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	301	305	first strand
Strand 2	A	413	422	anti-parallel
Strand 3	A	326	337	anti-parallel
Strand 4	C	369	379	anti-parallel
Strand 5	C	382	391	anti-parallel
Strand 6	C	314	317	anti-parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	301	305	first strand
Strand 2	A	413	422	anti-parallel
Strand 3	A	326	337	anti-parallel
Strand 4	C	369	379	anti-parallel
Strand 5	C	382	391	anti-parallel
Strand 6	C	406	408	anti-parallel
Strand 7	C	402	403	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	314	317	first strand
Strand 2	A	382	391	anti-parallel
Strand 3	A	406	408	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	314	317	first strand
Strand 2	A	382	391	anti-parallel
Strand 3	A	369	379	anti-parallel
Strand 4	B	326	337	anti-parallel
Strand 5	B	413	422	anti-parallel
Strand 6	B	301	305	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	343	344	first strand
Strand 2	A	352	353	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	55	56	first strand
Strand 2	B	59	60	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	70	73	first strand
Strand 2	B	116	127	anti-parallel
Strand 3	B	138	149	anti-parallel
Strand 4	B	220	228	anti-parallel
Strand 5	B	177	185	anti-parallel
Strand 6	B	190	197	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	314	317	first strand
Strand 2	B	382	391	anti-parallel
Strand 3	B	406	408	anti-parallel
Strand 4	B	402	403	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	314	317	first strand
Strand 2	B	382	391	anti-parallel
Strand 3	B	369	379	anti-parallel
Strand 4	C	326	337	anti-parallel
Strand 5	C	413	422	anti-parallel
Strand 6	C	301	305	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	343	344	first strand
Strand 2	B	352	353	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	55	56	first strand
Strand 2	C	59	60	anti-parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	70	74	first strand
Strand 2	C	116	127	anti-parallel
Strand 3	C	138	149	anti-parallel
Strand 4	C	220	225	anti-parallel
Strand 5	C	179	186	anti-parallel
Strand 6	C	189	197	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	343	344	first strand
Strand 2	C	352	353	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7W63

Analysis of interatomic Contacts of Structural Units in PDB entry:
7W63