Analysis of interatomic Contacts of Structural Units in PDB entry:
7W65

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7W65 entry

There are 6 chains in PDB entry 7W65 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 34	ASN 423
B	SER 34	ASN 423
C	GLU 29	ASN 423
D	PHE 1	LYS 318
E	PHE 1	LYS 318
F	PHE 1	LYS 318

There are 55 helices in PDB entry 7W65. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	35	53	Right-handed alpha
Helix 2	AA2	A	62	65	Right-handed 310
Helix 3	AA3	A	77	81	Right-handed 310
Helix 4	AA4	A	153	155	Right-handed 310
Helix 5	AA5	A	156	171	Right-handed alpha
Helix 6	AA6	A	198	204	Right-handed alpha
Helix 7	AA7	A	204	215	Right-handed alpha
Helix 8	AA8	B	35	53	Right-handed alpha
Helix 9	AA9	B	62	65	Right-handed 310
Helix 10	AB1	B	77	81	Right-handed 310
Helix 11	AB2	B	153	155	Right-handed 310
Helix 12	AB3	B	156	171	Right-handed alpha
Helix 13	AB4	B	198	204	Right-handed alpha
Helix 14	AB5	B	204	214	Right-handed alpha
Helix 15	AB6	C	31	53	Right-handed alpha
Helix 16	AB7	C	62	65	Right-handed 310
Helix 17	AB8	C	77	81	Right-handed 310
Helix 18	AB9	C	153	155	Right-handed 310
Helix 19	AC1	C	156	171	Right-handed alpha
Helix 20	AC2	C	198	204	Right-handed alpha
Helix 21	AC3	C	204	215	Right-handed alpha
Helix 22	AC4	D	30	37	Right-handed alpha
Helix 23	AC5	D	40	48	Right-handed 310
Helix 24	AC6	D	56	63	Right-handed 310
Helix 25	AC7	D	75	85	Right-handed alpha
Helix 26	AC8	D	87	95	Right-handed alpha
Helix 27	AC9	D	96	99	Right-handed 310
Helix 28	AD1	D	111	124	Right-handed alpha
Helix 29	AD2	D	128	135	Right-handed alpha
Helix 30	AD3	D	215	220	Right-handed alpha
Helix 31	AD4	D	280	287	Right-handed alpha
Helix 32	AD5	D	314	318	Right-handed 310
Helix 33	AD6	E	30	37	Right-handed alpha
Helix 34	AD7	E	40	47	Right-handed 310
Helix 35	AD8	E	56	63	Right-handed 310
Helix 36	AD9	E	75	85	Right-handed alpha
Helix 37	AE1	E	87	95	Right-handed alpha
Helix 38	AE2	E	96	99	Right-handed 310
Helix 39	AE3	E	111	124	Right-handed alpha
Helix 40	AE4	E	128	135	Right-handed alpha
Helix 41	AE5	E	215	219	Right-handed alpha
Helix 42	AE6	E	220	222	Right-handed 310
Helix 43	AE7	E	280	287	Right-handed alpha
Helix 44	AE8	E	314	318	Right-handed 310
Helix 45	AE9	F	30	37	Right-handed alpha
Helix 46	AF1	F	40	47	Right-handed 310
Helix 47	AF2	F	56	63	Right-handed 310
Helix 48	AF3	F	75	85	Right-handed alpha
Helix 49	AF4	F	87	95	Right-handed alpha
Helix 50	AF5	F	96	99	Right-handed 310
Helix 51	AF6	F	111	124	Right-handed alpha
Helix 52	AF7	F	128	135	Right-handed alpha
Helix 53	AF8	F	215	220	Right-handed alpha
Helix 54	AF9	F	280	287	Right-handed alpha
Helix 55	AG1	F	314	318	Right-handed 310

There are 33 sheets in PDB entry 7W65. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	55	56	first strand
Strand 2	A	59	60	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	70	73	first strand
Strand 2	A	116	127	anti-parallel
Strand 3	A	138	149	anti-parallel
Strand 4	A	220	225	anti-parallel
Strand 5	A	179	185	anti-parallel
Strand 6	A	190	197	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	263	267	first strand
Strand 2	A	272	284	anti-parallel
Strand 3	C	282	292	parallel
Strand 4	B	287	292	parallel
Strand 5	B	295	297	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	249	252	first strand
Strand 2	B	259	266	anti-parallel
Strand 3	B	273	276	anti-parallel
Strand 4	A	272	284	parallel
Strand 5	C	282	292	parallel
Strand 6	C	295	297	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	295	297	first strand
Strand 2	A	287	292	anti-parallel
Strand 3	B	282	284	parallel
Strand 4	C	272	276	parallel
Strand 5	C	263	267	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	301	306	first strand
Strand 2	A	413	422	anti-parallel
Strand 3	A	326	336	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	314	317	first strand
Strand 2	A	382	391	anti-parallel
Strand 3	A	369	378	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	314	317	first strand
Strand 2	A	382	391	anti-parallel
Strand 3	A	406	408	anti-parallel
Strand 4	A	402	403	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	343	344	first strand
Strand 2	A	352	353	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	55	56	first strand
Strand 2	B	59	60	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	70	74	first strand
Strand 2	B	116	127	anti-parallel
Strand 3	B	138	149	anti-parallel
Strand 4	B	220	228	anti-parallel
Strand 5	B	177	185	anti-parallel
Strand 6	B	190	197	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	301	305	first strand
Strand 2	B	413	422	anti-parallel
Strand 3	B	326	336	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	314	317	first strand
Strand 2	B	382	391	anti-parallel
Strand 3	B	369	378	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	314	317	first strand
Strand 2	B	382	391	anti-parallel
Strand 3	B	406	408	anti-parallel
Strand 4	B	402	403	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	343	344	first strand
Strand 2	B	352	353	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	55	56	first strand
Strand 2	C	59	60	anti-parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	70	73	first strand
Strand 2	C	116	127	anti-parallel
Strand 3	C	138	149	anti-parallel
Strand 4	C	220	225	anti-parallel
Strand 5	C	179	185	anti-parallel
Strand 6	C	190	197	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	301	305	first strand
Strand 2	C	413	422	anti-parallel
Strand 3	C	326	336	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	314	317	first strand
Strand 2	C	382	391	anti-parallel
Strand 3	C	369	378	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	314	317	first strand
Strand 2	C	382	391	anti-parallel
Strand 3	C	406	408	anti-parallel
Strand 4	C	402	403	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	343	344	first strand
Strand 2	C	352	353	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	107	108	first strand
Strand 2	D	168	169	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	162	163	first strand
Strand 2	D	138	144	parallel
Strand 3	D	147	153	anti-parallel
Strand 4	D	182	183	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	211	214	first strand
Strand 2	D	266	269	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	250	254	first strand
Strand 2	D	230	236	anti-parallel
Strand 3	D	293	299	anti-parallel
Strand 4	D	308	309	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	107	108	first strand
Strand 2	E	168	169	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	162	163	first strand
Strand 2	E	138	144	parallel
Strand 3	E	147	153	anti-parallel
Strand 4	E	182	183	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	211	214	first strand
Strand 2	E	266	269	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	250	254	first strand
Strand 2	E	230	236	anti-parallel
Strand 3	E	293	299	anti-parallel
Strand 4	E	308	309	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	107	108	first strand
Strand 2	F	168	169	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	162	163	first strand
Strand 2	F	138	144	parallel
Strand 3	F	147	153	anti-parallel
Strand 4	F	182	183	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	211	214	first strand
Strand 2	F	266	269	anti-parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	250	254	first strand
Strand 2	F	230	236	anti-parallel
Strand 3	F	293	299	anti-parallel
Strand 4	F	308	309	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7W65

Analysis of interatomic Contacts of Structural Units in PDB entry:
7W65