Analysis of interatomic Contacts of Structural Units in PDB entry:
7W6A


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7W6A entry

There are 3 chains in PDB entry 7W6A (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 286GLY 504
C
 SER 3812ASN 3970
F
 PHE 336ILE 354
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 5 helices in PDB entry 7W6A. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
501 504Right-handed 310
Helix 2
AA2
C
3815 3830Right-handed alpha
Helix 3
AA3
C
3867 3878Right-handed alpha
Helix 4
AA4
C
3901 3906Right-handed 310
Helix 5
AA5
C
3951 3955Right-handed 310
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There are 7 sheets in PDB entry 7W6A. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
289 294first strand
Strand 2
A
314 318anti-parallel
Strand 3
A
469 475anti-parallel
Strand 4
A
341 347anti-parallel
Strand 5
A
363 367anti-parallel
Strand 6
A
373 375anti-parallel
Strand 7
A
378 380anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
299 300first strand
Strand 2
A
306 308anti-parallel
Strand 3
A
479 483anti-parallel
Strand 4
A
325 335anti-parallel
Strand 5
A
391 398anti-parallel
Strand 6
A
446 451anti-parallel
Strand 7
A
454 461anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
299 300first strand
Strand 2
A
306 308anti-parallel
Strand 3
A
479 483anti-parallel
Strand 4
A
325 335anti-parallel
Strand 5
A
498 499parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
3831 3835first strand
Strand 2
C
3841 3845anti-parallel
Strand 3
C
3940 3943anti-parallel
Strand 4
C
3907 3908parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
3854 3857first strand
Strand 2
C
3924 3931anti-parallel
Strand 3
C
3914 3921anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
3885 3887first strand
Strand 2
C
3892 3895anti-parallel
Strand 3
C
3861 3864anti-parallel
Strand 4
F
343 344parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
3899 3900first strand
Strand 2
F
337 338parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il