Analysis of interatomic Contacts of Structural Units in PDB entry:
7W6Y


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7W6Y entry

There is 1 chain in PDB entry 7W6Y (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MSE 1GLN 456
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 7W6Y. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2 34Right-handed alpha
Helix 2
AA2
A
84 88Right-handed 310
Helix 3
AA3
A
93 123Right-handed alpha
Helix 4
AA4
A
138 143Right-handed alpha
Helix 5
AA5
A
161 172Right-handed alpha
Helix 6
AA6
A
207 212Right-handed 310
Helix 7
AA7
A
232 238Right-handed alpha
Helix 8
AA8
A
255 266Right-handed alpha
Helix 9
AA9
A
315 342Right-handed alpha
Helix 10
AB1
A
368 387Right-handed alpha
Helix 11
AB2
A
394 409Right-handed alpha
Helix 12
AB3
A
415 446Right-handed alpha
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There are 6 sheets in PDB entry 7W6Y. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
49 52first strand
Strand 2
A
58 61anti-parallel
Strand 3
A
37 44parallel
Strand 4
A
64 72anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
124 127first strand
Strand 2
A
309 312anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
157 158first strand
Strand 2
A
149 154anti-parallel
Strand 3
A
180 185anti-parallel
Strand 4
A
191 194anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
157 158first strand
Strand 2
A
149 154anti-parallel
Strand 3
A
130 134anti-parallel
Strand 4
A
214 216anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
225 228first strand
Strand 2
A
302 304anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
251 252first strand
Strand 2
A
244 248anti-parallel
Strand 3
A
271 277anti-parallel
Strand 4
A
280 286anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il