Analysis of interatomic Contacts of Structural Units in PDB entry:
7W71

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7W71 entry

There are 6 chains in PDB entry 7W71 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	ILE 222	ILE 309
A	ILE 222	ILE 309
H	GLN 1	ASP 217
L	ASP 1	GLU 213
I	GLN 1	ASP 217
M	ASP 1	ASN 212

There are 15 helices in PDB entry 7W71. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	233	238	Right-handed alpha
Helix 2	AA2	B	256	267	Right-handed alpha
Helix 3	AA3	A	233	238	Right-handed alpha
Helix 4	AA4	A	256	266	Right-handed alpha
Helix 5	AA5	H	87	91	Right-handed 310
Helix 6	AA6	H	203	205	Right-handed 310
Helix 7	AA7	L	79	83	Right-handed 310
Helix 8	AA8	L	121	127	Right-handed alpha
Helix 9	AA9	L	183	187	Right-handed alpha
Helix 10	AB1	I	87	91	Right-handed 310
Helix 11	AB2	I	159	161	Right-handed 310
Helix 12	AB3	I	203	205	Right-handed 310
Helix 13	AB4	M	79	83	Right-handed 310
Helix 14	AB5	M	121	128	Right-handed alpha
Helix 15	AB6	M	183	187	Right-handed alpha

There are 26 sheets in PDB entry 7W71. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	226	229	first strand
Strand 2	B	304	306	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	252	253	first strand
Strand 2	B	245	249	anti-parallel
Strand 3	B	272	278	anti-parallel
Strand 4	B	281	287	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	290	292	first strand
Strand 2	B	299	301	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	228	229	first strand
Strand 2	A	304	305	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	252	253	first strand
Strand 2	A	244	249	anti-parallel
Strand 3	A	272	278	anti-parallel
Strand 4	A	281	287	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	290	292	first strand
Strand 2	A	299	301	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	6	first strand
Strand 2	H	22	25	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	12	first strand
Strand 2	H	110	114	parallel
Strand 3	H	93	97	anti-parallel
Strand 4	H	34	39	anti-parallel
Strand 5	H	45	51	anti-parallel
Strand 6	H	58	60	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	18	20	first strand
Strand 2	H	78	83	anti-parallel
Strand 3	H	68	73	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	123	127	first strand
Strand 2	H	138	148	anti-parallel
Strand 3	H	177	187	anti-parallel
Strand 4	H	166	168	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	123	127	first strand
Strand 2	H	138	148	anti-parallel
Strand 3	H	177	187	anti-parallel
Strand 4	H	172	174	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	154	157	first strand
Strand 2	H	197	202	anti-parallel
Strand 3	H	207	212	anti-parallel
Strand 4	I	207	212	anti-parallel
Strand 5	I	197	202	anti-parallel
Strand 6	I	154	157	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	4	7	first strand
Strand 2	L	19	25	anti-parallel
Strand 3	L	70	75	anti-parallel
Strand 4	L	62	67	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	13	first strand
Strand 2	L	102	106	parallel
Strand 3	L	85	90	anti-parallel
Strand 4	L	33	38	anti-parallel
Strand 5	L	45	46	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	114	118	first strand
Strand 2	L	129	139	anti-parallel
Strand 3	L	173	182	anti-parallel
Strand 4	L	159	163	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	153	155	first strand
Strand 2	L	145	150	anti-parallel
Strand 3	L	191	197	anti-parallel
Strand 4	L	205	210	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	3	6	first strand
Strand 2	I	18	25	anti-parallel
Strand 3	I	78	83	anti-parallel
Strand 4	I	68	73	anti-parallel

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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	10	12	first strand
Strand 2	I	110	114	parallel
Strand 3	I	92	97	anti-parallel
Strand 4	I	34	39	anti-parallel
Strand 5	I	45	51	anti-parallel
Strand 6	I	58	60	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	123	127	first strand
Strand 2	I	138	148	anti-parallel
Strand 3	I	177	187	anti-parallel
Strand 4	I	166	168	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	123	127	first strand
Strand 2	I	138	148	anti-parallel
Strand 3	I	177	187	anti-parallel
Strand 4	I	172	174	anti-parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	10	13	first strand
Strand 2	M	102	106	parallel
Strand 3	M	84	90	anti-parallel
Strand 4	M	33	38	anti-parallel
Strand 5	M	44	46	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	10	13	first strand
Strand 2	M	102	106	parallel
Strand 3	M	84	90	anti-parallel
Strand 4	M	97	98	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	19	22	first strand
Strand 2	M	71	75	anti-parallel
Strand 3	M	62	66	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	48	49	first strand
Strand 2	M	53	54	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	114	118	first strand
Strand 2	M	129	139	anti-parallel
Strand 3	M	173	182	anti-parallel
Strand 4	M	159	163	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	153	155	first strand
Strand 2	M	144	150	anti-parallel
Strand 3	M	191	198	anti-parallel
Strand 4	M	205	210	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7W71

Analysis of interatomic Contacts of Structural Units in PDB entry:
7W71