Analysis of interatomic Contacts of Structural Units in PDB entry:
7W72

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7W72 entry

There are 5 chains in PDB entry 7W72 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
U	MET 1	LEU 420
S	ALA 7	LYS 539
T	ALA 26	HIS 552
K	ARG 39	TYR 386
A	VAL 8	TRP 620

There are 88 helices in PDB entry 7W72. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	U	2	22	Right-handed alpha
Helix 2	AA2	U	24	31	Right-handed alpha
Helix 3	AA3	U	40	54	Right-handed alpha
Helix 4	AA4	U	66	76	Right-handed alpha
Helix 5	AA5	U	79	117	Right-handed alpha
Helix 6	AA6	U	135	146	Right-handed alpha
Helix 7	AA7	U	147	156	Right-handed alpha
Helix 8	AA8	U	159	177	Right-handed alpha
Helix 9	AA9	U	178	194	Right-handed alpha
Helix 10	AB1	U	199	212	Right-handed alpha
Helix 11	AB2	U	219	249	Right-handed alpha
Helix 12	AB3	U	252	264	Right-handed alpha
Helix 13	AB4	U	274	280	Right-handed alpha
Helix 14	AB5	U	285	300	Right-handed alpha
Helix 15	AB6	U	300	308	Right-handed alpha
Helix 16	AB7	U	311	326	Right-handed alpha
Helix 17	AB8	U	331	340	Right-handed alpha
Helix 18	AB9	U	341	349	Right-handed 310
Helix 19	AC1	U	354	378	Right-handed alpha
Helix 20	AC2	U	383	418	Right-handed alpha
Helix 21	AC3	S	8	30	Right-handed alpha
Helix 22	AC4	S	30	40	Right-handed alpha
Helix 23	AC5	S	49	54	Right-handed alpha
Helix 24	AC6	S	112	119	Right-handed alpha
Helix 25	AC7	S	122	130	Right-handed alpha
Helix 26	AC8	S	179	194	Right-handed alpha
Helix 27	AC9	S	198	205	Right-handed alpha
Helix 28	AD1	S	247	262	Right-handed alpha
Helix 29	AD2	S	263	266	Right-handed 310
Helix 30	AD3	S	296	303	Right-handed 310
Helix 31	AD4	S	304	311	Right-handed alpha
Helix 32	AD5	S	330	334	Right-handed 310
Helix 33	AD6	S	381	397	Right-handed alpha
Helix 34	AD7	S	419	452	Right-handed alpha
Helix 35	AD8	S	458	480	Right-handed alpha
Helix 36	AD9	S	483	503	Right-handed alpha
Helix 37	AE1	S	504	508	Right-handed 310
Helix 38	AE2	S	514	519	Right-handed alpha
Helix 39	AE3	S	522	539	Right-handed alpha
Helix 40	AE4	T	70	80	Right-handed alpha
Helix 41	AE5	T	122	139	Right-handed alpha
Helix 42	AE6	T	141	145	Right-handed 310
Helix 43	AE7	T	182	192	Right-handed alpha
Helix 44	AE8	T	199	205	Right-handed 310
Helix 45	AE9	T	206	211	Right-handed alpha
Helix 46	AF1	T	259	265	Right-handed alpha
Helix 47	AF2	T	342	346	Right-handed 310
Helix 48	AF3	T	452	456	Right-handed 310
Helix 49	AF4	T	459	463	Right-handed 310
Helix 50	AF5	T	490	494	Right-handed 310
Helix 51	AF6	T	525	548	Right-handed alpha
Helix 52	AF7	K	58	76	Right-handed alpha
Helix 53	AF8	K	78	80	Right-handed 310
Helix 54	AF9	K	124	126	Right-handed 310
Helix 55	AG1	K	127	137	Right-handed alpha
Helix 56	AG2	K	180	193	Right-handed alpha
Helix 57	AG3	K	207	211	Right-handed 310
Helix 58	AG4	K	249	259	Right-handed alpha
Helix 59	AG5	K	267	271	Right-handed 310
Helix 60	AG6	K	299	303	Right-handed 310
Helix 61	AG7	K	350	357	Right-handed alpha
Helix 62	AG8	K	367	386	Right-handed alpha
Helix 63	AG9	A	9	19	Right-handed alpha
Helix 64	AH1	A	20	38	Right-handed alpha
Helix 65	AH2	A	52	57	Right-handed alpha
Helix 66	AH3	A	66	84	Right-handed alpha
Helix 67	AH4	A	88	99	Right-handed alpha
Helix 68	AH5	A	156	171	Right-handed alpha
Helix 69	AH6	A	189	201	Right-handed alpha
Helix 70	AH7	A	241	245	Right-handed 310
Helix 71	AH8	A	248	263	Right-handed alpha
Helix 72	AH9	A	281	300	Right-handed alpha
Helix 73	AI1	A	305	310	Right-handed alpha
Helix 74	AI2	A	311	313	Right-handed 310
Helix 75	AI3	A	331	347	Right-handed alpha
Helix 76	AI4	A	370	398	Right-handed alpha
Helix 77	AI5	A	424	426	Right-handed 310
Helix 78	AI6	A	427	448	Right-handed alpha
Helix 79	AI7	A	448	456	Right-handed alpha
Helix 80	AI8	A	459	477	Right-handed alpha
Helix 81	AI9	A	480	485	Right-handed 310
Helix 82	AJ1	A	493	517	Right-handed alpha
Helix 83	AJ2	A	517	534	Right-handed alpha
Helix 84	AJ3	A	542	551	Right-handed alpha
Helix 85	AJ4	A	552	568	Right-handed alpha
Helix 86	AJ5	A	573	596	Right-handed alpha
Helix 87	AJ6	A	599	606	Right-handed alpha
Helix 88	AJ7	A	606	619	Right-handed alpha

There are 15 sheets in PDB entry 7W72. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	86	89	first strand
Strand 2	S	99	106	anti-parallel
Strand 3	S	58	69	parallel
Strand 4	S	109	110	parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	86	89	first strand
Strand 2	S	99	106	anti-parallel
Strand 3	S	58	69	parallel
Strand 4	S	142	147	parallel
Strand 5	S	167	171	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	267	268	first strand
Strand 2	S	226	235	parallel
Strand 3	S	271	276	parallel
Strand 4	T	65	66	parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	267	268	first strand
Strand 2	S	226	235	parallel
Strand 3	S	321	327	parallel
Strand 4	S	358	361	parallel
Strand 5	S	350	352	anti-parallel
Strand 6	K	311	312	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	241	244	first strand
Strand 2	S	376	379	parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	285	287	first strand
Strand 2	S	292	295	anti-parallel
Strand 3	S	336	338	parallel

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There are 10 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	171	176	first strand
Strand 2	T	109	116	anti-parallel
Strand 3	T	82	92	anti-parallel
Strand 4	T	215	216	anti-parallel
Strand 5	T	234	246	anti-parallel
Strand 6	T	44	54	anti-parallel
Strand 7	T	29	38	anti-parallel
Strand 8	T	275	283	parallel
Strand 9	T	312	319	anti-parallel
Strand 10	T	302	307	anti-parallel

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There are 10 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	171	176	first strand
Strand 2	T	109	116	anti-parallel
Strand 3	T	82	92	anti-parallel
Strand 4	T	220	226	anti-parallel
Strand 5	T	234	246	anti-parallel
Strand 6	T	44	54	anti-parallel
Strand 7	T	29	38	anti-parallel
Strand 8	T	275	283	parallel
Strand 9	T	312	319	anti-parallel
Strand 10	T	302	307	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	353	359	first strand
Strand 2	T	366	374	anti-parallel
Strand 3	T	438	448	anti-parallel
Strand 4	T	393	402	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	413	417	first strand
Strand 2	T	426	434	anti-parallel
Strand 3	T	381	389	anti-parallel
Strand 4	T	470	476	anti-parallel
Strand 5	T	503	509	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	464	466	first strand
Strand 2	T	513	515	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	121	122	first strand
Strand 2	K	82	86	parallel
Strand 3	K	46	51	parallel
Strand 4	K	156	162	parallel
Strand 5	K	198	204	parallel
Strand 6	K	220	224	parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	165	166	first strand
Strand 2	K	169	172	anti-parallel
Strand 3	K	176	179	anti-parallel

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There are 8 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	208	209	first strand
Strand 2	A	102	111	anti-parallel
Strand 3	A	123	133	anti-parallel
Strand 4	A	179	185	anti-parallel
Strand 5	A	142	149	parallel
Strand 6	A	218	223	parallel
Strand 7	A	315	322	parallel
Strand 8	A	226	227	parallel

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There are 9 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	208	209	first strand
Strand 2	A	102	111	anti-parallel
Strand 3	A	123	133	anti-parallel
Strand 4	A	179	185	anti-parallel
Strand 5	A	142	149	parallel
Strand 6	A	218	223	parallel
Strand 7	A	315	322	parallel
Strand 8	A	234	238	anti-parallel
Strand 9	A	266	268	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7W72

Analysis of interatomic Contacts of Structural Units in PDB entry:
7W72